Tag: Gene Ontology

Transcriptomics reveals how copper stress halts growth, damages membranes and reshapes gene expression in the magnetic bacterium Magnetospirillum gryphiswaldense MSR1.

A cross-tissue machine learning framework utilizing Gene Ontology pathway-level DNA methylation scores accurately identified asthma status across multiple airway epithelial ...

PathwayDenester re-evaluates enriched pathways by testing whether their significance depends on overlapping, more significant terms, filtering out 40 to 90 ...

A seven-year Pool-Seq study of a wild Drosophila melanogaster population near Ankara identified thousands of SNPs with directional allele frequency ...

An exploratory whole-genome sequencing study of four cagA-positive H. pylori gastric biopsies describes shared gene annotations involving COL3A1, ICAM1, and ...

A 120-hour methyl jasmonate induction series identified 11,789 differentially expressed genes in ginseng adventitious roots and co-expression modules associated with ...

A 1,000-protein, five-organism benchmark found that leading open-source language models showed biological semantic alignment but achieved a best macro-F1 of ...

A new study of 721 depression patients and 960 controls in China shows that pathway-based polygenic risk scores outperform conventional ...

A new transformer model called LitGene learns gene function by reading the scientific literature and aligning it with Gene Ontology ...

A large-scale reanalysis of 86 RNA-seq libraries shows that the developmental gene expression programs of Trypanosoma cruzi are largely conserved ...