Tag: computational biology

A systematic review of 38 studies finds that protein language models excel on benchmarks but largely lack experimental validation, prompting ...

A new computational framework called DeCTCF uses AI-predicted epigenomic features to sort more than 236,000 CTCF binding sites into 20 ...

A new computational study of Pseudomonas aeruginosa shows that transient population dynamics and inoculum size fundamentally reshape antibiotic susceptibility, prompting ...

A spatially resolved model of the yeast galactose switch shows that intracellular architecture, especially ER-bound translation, changes gene regulation predictions.

A new graph-attention-based generative adversarial network called GARAGE produces realistic synthetic single-cell RNA-seq data that preserves rare cell types and ...

A new computational framework called STARIT converts the spatial positions of mRNA molecules inside cells into image tensors, allowing deep ...

Researchers have developed CardamomOT, an optimal transport-based framework that jointly infers gene regulatory networks, reconstructs unobserved protein trajectories, and enables ...

Researchers at Kookmin University have developed AlterProtX, an AI framework that compares animal and non-animal proteomes at scale to identify ...

A new framework called Process Bigraph, implemented in Vivarium 2.0, provides a formal architecture for composing multiscale biological simulations from ...

A computational study of Aphaenogaster senilis ants shows that idle workers act as a dynamic reserve workforce that stabilizes colony ...