In recent years, the intricate connection between the gut microbiome and brain function has captivated the scientific community, heralding a new era of research into neuropsychiatric disorders. A groundbreaking area within this domain is fecal microbiota transplantation (FMT), where microbiota from psychiatric patients are transferred into animal models, predominantly mice, to explore causative links and therapeutic potentials. A comprehensive systematic review, recently published in Translational Psychiatry, sheds light on the burgeoning methodologies employed in FMT from psychiatric patients to murine models, while simultaneously issuing a clarion call for rigorous standardization across the field.
The review meticulously examines a wide array of studies aimed at dissecting the gut-brain axis through fecal transplantation. The promise of FMT lies in its ability to recapitulate, in an animal model, the complex microecological changes observed in human psychiatric conditions. However, the authors highlight significant methodological discrepancies across studies, including variations in donor selection criteria, fecal preparation methods, recipient conditioning protocols, and outcome assessment measures.
Among the core challenges underscored is the heterogeneity of donor psychiatric diagnoses. Psychiatric illnesses, ranging from depression and anxiety to schizophrenia and bipolar disorder, exhibit diverse pathophysiological profiles that influence gut microbial composition. The review stresses the imperative need for standardized diagnostic criteria and thorough clinical characterization of donors to ensure reproducibility and interpretability of results. Without harmonized donor inclusion parameters, inter-study comparability remains severely compromised.
The fecal sample preparation itself is a pivotal factor affecting transplant efficacy. Techniques vary widely, from fresh stool homogenization to cryopreserved samples, and differences in anaerobic handling can drastically alter microbial viability. Some protocols incorporate additional processing steps such as filtering or diluting, which may selectively skew microbial communities. The review advocates for a consensus on optimal fecal preparation methods that preserve community integrity while maintaining practical feasibility for widespread application.
Recipient mice conditioning prior to FMT is another major variable impacting experimental outcomes. Pre-treatment with antibiotics to eradicate endogenous microbiota or germ-free environments are standard approaches, yet each harbors inherent limitations. Antibiotic regimens differ in spectrum, duration, and timing, influencing the niche available for donor microbiota engraftment. Germ-free conditions, though ideal experimentally, are resource-intensive and not universally accessible. The review calls for a balanced, harmonized conditioning strategy underpinned by mechanistic understanding of microbiota colonization dynamics.
Functional readouts post-transplantation are equally diverse, encompassing behavioral, neurochemical, immunological, and metabolic parameters. While many studies report alterations in anxiety-like or depressive-like behaviors in recipient mice corresponding to donor psychiatric status, the variability in behavioral testing paradigms adds complexity to cross-study comparisons. Neuroinflammatory markers and neurotransmitter profiles occasionally complement behavioral data but lack uniform measurement standards. Such fragmented reporting inhibits meta-analytical synthesis and translational extrapolation.
Delving deeper, the review discusses the emerging mechanistic insights derived from psychiatric FMT models. Altered microbial communities appear capable of modulating neuroimmune pathways, hypothalamic-pituitary-adrenal axis activity, and neurotransmission. Metabolites such as short-chain fatty acids, tryptophan derivatives, and bile acids bridge the luminal and central nervous systems, suggesting novel therapeutic targets. Deciphering these mechanisms requires integrative approaches combining multi-omics, neurophysiology, and behavioral neuroscience, an endeavor the authors urge for robust methodological frameworks.
Beyond the laboratory, the translational implications of psychiatric FMT are profound yet currently nascent. Harnessing gut microbiota modulation to ameliorate psychiatric symptoms could revolutionize treatment paradigms, offering adjunctive or alternative strategies to pharmacotherapy. However, the review prudently cautions against premature clinical extrapolation without standardized preclinical rigor. It stresses the importance of validity, reproducibility, and comprehensive mechanistic understanding before embarking on human trials.
The ethical considerations surrounding psychiatric donor stool also receive attention. Standard fecal donor screening protocols primarily focus on infectious and gastrointestinal health, but psychiatric conditions add layers of complexity regarding informed consent, privacy, and stigma. Ethical frameworks tailored to psychiatric microbiota transplantation are urgently needed to navigate these challenges responsibly.
This exhaustive review functions as both a mirror and a roadmap for the psychiatric microbiota transplantation research community. By cataloging the spectrum of current methodological practices and pinpointing critical gaps, it provides a foundation for consensus-building efforts. The authors recommend collaborative networks to develop standardized protocols encompassing donor selection, fecal processing, recipient preparation, and outcome measures, fostering comparability and accelerating progress.
In conclusion, the field of fecal microbiota transplantation from psychiatric patients to mice is rapidly evolving but remains methodologically fragmented. This systematic review from D’Onofrio et al., published in Transl Psychiatry, serves as a pivotal resource highlighting the promise and pitfalls inherent in current practices. The call for methodological standardization is not merely academic—it is essential for transforming microbiota research into clinically actionable insights that could reshape mental health care. Future research anchored in harmonized protocols holds the key to unraveling the gut-brain axis mysteries and realizing the full therapeutic potential of microbiome modulation in psychiatry.
Subject of Research:
Fecal microbiota transplantation methodologies involving psychiatric patient donors and murine recipients to explore gut-brain axis interactions in neuropsychiatric disorders.
Article Title:
Fecal microbiota transplantation from psychiatric patients to mice – systematic review of methodologies and a call for standardization.
Article References:
D’Onofrio, A.M., Gomez-Nguyen, A., Camardese, G. et al. Fecal microbiota transplantation from psychiatric patients to mice – systematic review of methodologies and a call for standardization. Transl Psychiatry (2026). https://doi.org/10.1038/s41398-026-03847-4
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