<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>urine test &#8211; Science</title>
	<atom:link href="https://scienmag.com/tag/urine-test/feed/" rel="self" type="application/rss+xml" />
	<link>https://scienmag.com</link>
	<description></description>
	<lastBuildDate>Sat, 10 Oct 2026 22:42:38 +0000</lastBuildDate>
	<language>en-US</language>
	<sy:updatePeriod>
	hourly	</sy:updatePeriod>
	<sy:updateFrequency>
	1	</sy:updateFrequency>
	<generator>https://wordpress.org/?v=7.1.3</generator>

<image>
	<url>https://scienmag.com/wp-content/uploads/2024/07/cropped-scienmag_ico-32x32.jpg</url>
	<title>urine test &#8211; Science</title>
	<link>https://scienmag.com</link>
	<width>32</width>
	<height>32</height>
</image> 
<site xmlns="com-wordpress:feed-additions:1">73899611</site>	<item>
		<title>Urine Test Photos Sent by TB Patients Prove Reliable for Checking Medication Intake</title>
		<link>https://scienmag.com/urine-test-photos-sent-by-tb-patients-prove-reliable-for-checking-medication-intake/</link>
		
		<dc:creator><![CDATA[Ophelia Keating]]></dc:creator>
		<pubDate>Sat, 10 Oct 2026 22:42:38 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[Policy]]></category>
		<category><![CDATA[at-home TB treatment compliance assessment]]></category>
		<category><![CDATA[biochemical urine tests for TB patients]]></category>
		<category><![CDATA[diagnostic usability]]></category>
		<category><![CDATA[digital adherence technology]]></category>
		<category><![CDATA[digital health tools for TB management]]></category>
		<category><![CDATA[image analysis]]></category>
		<category><![CDATA[innovative TB drug adherence verification methods]]></category>
		<category><![CDATA[isoniazid metabolite]]></category>
		<category><![CDATA[lateral flow assay]]></category>
		<category><![CDATA[medication adherence]]></category>
		<category><![CDATA[mobile health]]></category>
		<category><![CDATA[mobile health solutions for infectious disease management]]></category>
		<category><![CDATA[mobile phone photo verification of medication intake]]></category>
		<category><![CDATA[patient companion app]]></category>
		<category><![CDATA[patient engagement in TB treatment adherence]]></category>
		<category><![CDATA[PLOS Global Public Health]]></category>
		<category><![CDATA[Randomized Controlled Trial]]></category>
		<category><![CDATA[remote monitoring of tuberculosis medication]]></category>
		<category><![CDATA[TB treatment adherence technology]]></category>
		<category><![CDATA[TB treatment support apps]]></category>
		<category><![CDATA[tuberculosis]]></category>
		<category><![CDATA[Tuberculosis medication adherence monitoring]]></category>
		<category><![CDATA[urine test]]></category>
		<category><![CDATA[urine-based biochemical testing for TB treatment]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=260154</guid>

					<description><![CDATA[A study of 1,655 patient-submitted smartphone images of a urine-based tuberculosis adherence test found that 72 percent were clearly interpretable, revealing fixable issues with photo blurriness, atypical strip colors, and cartridge artifacts.]]></description>
										<content:encoded><![CDATA[<p>Tuberculosis remains one of the world&#8217;s most stubborn infectious disease challenges, and the reason is not only the biology of the bacterium but also the sheer length of treatment. Curing drug-sensitive tuberculosis typically requires patients to take a combination of antibiotics for at least six months, and adherence over that long course is the single most important determinant of whether the infection is cleared, whether drug resistance emerges, and whether the disease spreads further in the community. Health systems have tried everything from directly observed therapy, in which a health worker watches each dose being swallowed, to pill counts, refill records, and digital pillboxes. Each approach carries costs, burdens, and blind spots. Now a research team reporting in PLOS Global Public Health has taken a careful, evidence-based look at a different strategy: a biochemical test that patients perform at home, photograph with a mobile phone, and upload through a companion app, allowing clinicians and treatment supporters to see objective evidence of recent medication ingestion.</p>
<p>The technology at the heart of the study is called the TB Treatment Support Tools, or TB-TST, system. It pairs a urine-based lateral flow assay with a mobile application designed for patient education, encouragement, and communication with treatment supporters. The lateral flow format will be familiar to anyone who has used a pregnancy test or a rapid antigen test: a sample wicks along a strip, and colored lines appear where target molecules are captured. In this case, the target is not the tuberculosis bacterium itself but a metabolite of isoniazid, one of the cornerstone drugs of TB therapy. When a patient takes isoniazid, the body breaks the drug down and excretes its metabolic products in urine. The test strip detects these metabolites, and a blue-purple color change signals that the medication was ingested recently. A negative result, in principle, means no recent dose was taken, giving caregivers a biochemical window into adherence that self-reporting simply cannot provide.</p>
<p>Because the test is read from a photograph rather than by a trained technician standing in a clinic, the entire approach depends on patients being able to capture usable images and on those images being interpretable at a distance. That is the question the research team set out to answer. In a pragmatic randomized controlled trial, participants aged sixteen or older who had been newly diagnosed with tuberculosis and had access to a mobile phone used the system as part of their routine care, uploading photographs of their test cartridges through the app. Rather than relying on the impressions of individual readers, the investigators applied a structured qualitative method known as visual content analysis, systematically coding 1,655 user-submitted test images to identify recurring patterns and problems that affected interpretation.</p>
<p>The coding process was iterative, meaning the researchers developed and refined a codebook as they reviewed images, adding and sharpening categories until they captured the full range of what appeared on screen. Three primary issue categories emerged from this analysis. The first concerned color variations in the test and control strips, which is critical because the assay&#8217;s meaning hinges on recognizing the correct blue-purple signal. The second category covered photo quality issues, since a blurry, poorly lit, or badly framed image can obscure even a perfectly executed test. The third category involved artifacts of the test cartridge and strip themselves, physical quirks of the device that can mimic or distort the expected color patterns.</p>
<p>The headline finding is reassuring for the technology&#8217;s prospects. Most of the submitted images, 72 percent, were consistent with either a clear positive result showing the characteristic blue-purple color change or a clear negative. In other words, despite the fact that the photographs were taken by patients in real-world home settings, with all the variability in lighting, skill, and device quality that implies, the large majority of tests could be read with confidence. That proportion is a meaningful benchmark for any home-based diagnostic or monitoring tool, and it suggests that the burden of interpretation does not fall disproportionately on ambiguous results that would force clinicians to guess.</p>
<p>The remaining images, however, reveal exactly where the system&#8217;s weak points lie, and the researchers cataloged them in detail. Among the results that were not clear positives, the team observed strips showing no color change at all, appearing white; strips displaying yellow or orange hues; and strips with green or teal coloration. Each of these atypical outcomes raises interpretive questions. A white strip could reflect a failed test or an expired cartridge. Yellow and orange tones might represent intermediate chemistry on the way to the expected color change, while green and teal hues fall outside the expected palette entirely. Without clear protocols for handling these atypical colors, readers may hesitate, misclassify, or request repeat tests, all of which erode the efficiency that home-based monitoring is supposed to deliver.</p>
<p>Photo quality proved to be the second major source of difficulty, and blurriness was by far the most common image quality issue encountered. This is an intuitive but important finding: smartphone cameras are capable of excellent macro photography, but patients holding a small plastic cartridge at arm&#8217;s length, perhaps in imperfect lighting, do not always achieve focus. The good news embedded in this finding is that image quality is arguably the most tractable of the problems identified. Unlike the chemistry of the assay, which is fixed by the test&#8217;s design, the quality of a photograph can be improved through user guidance, in-app prompts, automatic focus checks, and real-time feedback that tells a patient before submission whether the image is sharp enough to read.</p>
<p>The third category, test cartridge and strip artifacts, points to engineering rather than behavioral fixes. The most frequently observed artifact was visual evidence consistent with dye bleed, or possible cross-strip contamination, between the control and test lines of the device. In a lateral flow assay, the control line confirms that the test functioned properly, while the test line carries the diagnostic signal. When dye migrates or bleeds from one region to another, the boundary between those signals can blur, complicating the reading. This kind of artifact is a design problem, and the authors argue that refinements to the cartridge itself could reduce its occurrence, protecting the clarity of results at the source rather than compensating for it downstream.</p>
<p>What makes this study notable methodologically is its fusion of qualitative image analysis with engineering design thinking. Instead of treating ambiguous images as noise to be discarded, the team treated them as data about the user experience, each problematic photograph a clue about where the system, the instructions, the device, or the interpretation protocol was failing the patient. This user-centered framing transforms a pile of blurry and oddly colored pictures into a concrete improvement roadmap. The authors identify four priority directions: enhanced user guidance for image capture, refinement of cartridge design to reduce artifacts, clearer interpretation protocols for atypical color outcomes, and automated image-based reading, in which software rather than a human eye would classify the strip, potentially standardizing results and reducing reader burden simultaneously.</p>
<p>The broader implications extend well beyond tuberculosis. Digital adherence technologies are a growing field, and pairing biochemical verification with mobile image reporting is an elegant way to combine objectivity with patient autonomy, allowing people to test at home while still generating verifiable evidence for their care teams. The finding that relatively few images were truly difficult to interpret, despite the challenges in submission and test appearance, supports the feasibility of user-submitted lateral flow images for monitoring recent isoniazid ingestion in routine care. As home-based testing expands across infectious disease, chronic disease management, and beyond, the lessons from this trial are clear: the chemistry of a test is only half the product, and the other half is the human being holding the phone. Designing for that person, with better guidance, better hardware, and smarter automated reading, is what will turn a promising prototype into a dependable public health tool.</p>
<p><strong>Subject of Research:</strong> Evaluation of a urine-based lateral flow assay for monitoring tuberculosis medication adherence through patient-submitted smartphone images</p>
<p><strong>Article Title:</strong> Evaluating a biochemical TB medication adherence test: Insights from image-based reporting through a patient companion app</p>
<p><strong>Article References:</strong> Lee, K., Liang, E. C., Tolentino, A., Trinh, A., Leon, D., Goodwin, K., Sprecher, J., Rubinstein, F., Lutz, B., &amp; Iribarren, S. (2026). Evaluating a biochemical TB medication adherence test: Insights from image-based reporting through a patient companion app. <em>PLOS Global Public Health, 6</em>(10), e0007182. <a href="https://doi.org/10.1371/journal.pgph.0007182" rel="noopener noreferrer">https://doi.org/10.1371/journal.pgph.0007182</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1371/journal.pgph.0007182" rel="noopener noreferrer">10.1371/journal.pgph.0007182</a></p>
<p><strong>Keywords:</strong> tuberculosis, medication adherence, lateral flow assay, isoniazid metabolite, mobile health, digital adherence technology, urine test, image analysis, patient companion app, randomized controlled trial, PLOS Global Public Health, diagnostic usability</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">260154</post-id>	</item>
		<item>
		<title>Simple Urine Test Reads Tumor RNA to Detect Bladder Cancer and Predict Treatment Response</title>
		<link>https://scienmag.com/simple-urine-test-reads-tumor-rna-to-detect-bladder-cancer-and-predict-treatment-response/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sat, 03 Oct 2026 18:19:20 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[BCG immunotherapy]]></category>
		<category><![CDATA[biomarker]]></category>
		<category><![CDATA[bladder cancer]]></category>
		<category><![CDATA[bladder cancer biomarkers]]></category>
		<category><![CDATA[bladder cancer detection]]></category>
		<category><![CDATA[cancer diagnostic technology]]></category>
		<category><![CDATA[cell-free RNA]]></category>
		<category><![CDATA[chemotherapy]]></category>
		<category><![CDATA[cystoscopy]]></category>
		<category><![CDATA[early cancer detection methods]]></category>
		<category><![CDATA[innovative urine test for cancer]]></category>
		<category><![CDATA[liquid biopsy]]></category>
		<category><![CDATA[Nature Medicine]]></category>
		<category><![CDATA[non-invasive cancer diagnosis]]></category>
		<category><![CDATA[personalized cancer therapy]]></category>
		<category><![CDATA[precision oncology]]></category>
		<category><![CDATA[predictive cancer treatment response]]></category>
		<category><![CDATA[RNA vs DNA liquid biopsy]]></category>
		<category><![CDATA[Stanford Medicine]]></category>
		<category><![CDATA[tumor gene expression profiling]]></category>
		<category><![CDATA[tumor RNA analysis]]></category>
		<category><![CDATA[uRARE-seq]]></category>
		<category><![CDATA[urine test]]></category>
		<category><![CDATA[urine-based liquid biopsy]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=231266</guid>

					<description><![CDATA[A new urine test that reads RNA shed by bladder tumor cells outperforms standard diagnostics and predicts whether patients will respond to immunotherapy or chemotherapy.]]></description>
										<content:encoded><![CDATA[<p>A simple urine test developed by researchers at Stanford Medicine and the VA Palo Alto Health Care System can diagnose bladder cancer more accurately than the current standard methods, and, remarkably, can also tell physicians how a patient&#8217;s tumor is likely to respond to treatment before a single drug is administered. The test, described in a study publishing October 2 in Nature Medicine, represents a significant advance in liquid biopsy technology, a field that has long sought to replace invasive procedures with a routine sample of bodily fluid. Rather than hunting for cancer-related mutations in DNA, as most existing liquid biopsies do, the new assay measures RNA messages shed by tumor cells into the urine, capturing not just the presence of a cancer but its active biological behavior.</p>
<p>The distinction between reading DNA and reading RNA is central to why this test works so well. DNA mutations reveal that a cancer exists, but they say little about what the cancer is actually doing inside the body. RNA, by contrast, reflects which genes a cell is actively using at a given moment, offering a dynamic snapshot of tumor behavior. Maximilian Diehn, MD, PhD, the Jack, Lulu, and Sam Willson Professor and a professor of radiation oncology at Stanford, explained the difference in practical terms: measuring tumor DNA in urine can tell clinicians whether a cancer is present, he said, but analyzing RNA can tell them not only whether a cancer is present but also what it is doing. That added layer of information is what allows the test to move beyond diagnosis and into the realm of treatment prediction.</p>
<p>The clinical need for better tools is substantial. Roughly 85,000 people in the United States are diagnosed with bladder cancer each year, and the disease is notoriously prone to recurrence and expensive to monitor. Diagnosis and surveillance currently depend on cystoscopy, a procedure in which an endoscope is threaded into the bladder to visually inspect for suspicious tissue. Cystoscopy can miss up to 30 percent of cancer cases, and patients with a history of non-muscle-invasive bladder cancer may need to undergo the procedure as often as every three months for the rest of their lives. The physical burden, the anxiety, and the cumulative cost of this surveillance regimen make a reliable noninvasive alternative one of the most sought-after goals in urologic oncology.</p>
<p>Diehn and Ash Alizadeh, MD, PhD, the Moghadam Family Professor, have collaborated on liquid biopsy technology for more than a decade. In 2014, the pair developed CAPP-Seq, short for cancer personalized profiling by deep sequencing, a method capable of detecting trace amounts of tumor DNA in the blood of lung cancer patients. The technique was later shown to classify lymphoma subtypes and flag emerging drug resistance. The researchers wondered whether a similar approach applied to urine could enhance the diagnosis, monitoring, and treatment of bladder cancer, but the bladder presented unique challenges that made a straightforward adaptation impossible.</p>
<p>The central problem is something researchers call the field effect. Normal bladder lining cells often accumulate their own mutations that overlap with those found in a patient&#8217;s actual tumor, a consequence of the same environmental exposures, such as smoking, that drive bladder cancer in the first place. A DNA-based test can mistake these bystander mutations for cancer, and correcting for the error typically requires first sequencing a patient&#8217;s tumor and normal tissue to learn which mutations to track and which to disregard. RNA-based testing sidesteps this obstacle entirely. Because RNA messages reflect overall gene activity rather than individual mutations, the test does not require matched tumor samples. Alizadeh noted that for DNA-based, tumor-informed approaches, clinicians need to know exactly what a tumor&#8217;s mutations look like to track disease, whereas RNA offers a biological signature of disease rather than an exact likeness, and urine provides a noninvasive way to detect and track it.</p>
<p>Designing a urine-based RNA test was nonetheless technically demanding, because RNA molecules in urine are fragmented and relatively rare. The research team, led by graduate student Kevin J. Liu, adapted a genetic sequencing method originally designed for RNA in blood plasma and designed a custom gene panel to identify RNA messages that are rare in healthy urine but abundant when a patient has a genitourinary tumor. The resulting assay, named uRARE-seq, which stands for urine random priming and affinity capture of cell-free RNA fragments for enrichment analysis by sequencing, was applied to samples from patients with bladder, kidney, and prostate cancer. It closely tracked the biology of the tumors and could even distinguish low-grade from high-grade bladder cancer, an important distinction that guides how aggressively a tumor must be treated.</p>
<p>The performance figures are striking. In a study of 683 urine samples from patients and healthy volunteers, uRARE-seq correctly identified 95 percent of people with localized bladder cancer and correctly cleared 90 percent of those who did not have the disease. That sensitivity and specificity outperformed both standard urine cytology, in which urine is examined under a microscope to identify cancerous cells, and an existing DNA-based urine test. The test also proved capable of identifying residual disease left behind after surgery and after BCG immunotherapy, giving clinicians a way to assess treatment response without repeated invasive procedures.</p>
<p>Perhaps the most consequential finding concerns treatment prediction. The researchers discovered that patients who subsequently responded to BCG therapy had pre-treatment urine RNA messages rich in genes involved in T-cell and immune-signaling activity, while those who failed to respond showed molecular signs of rapidly dividing tumor cells. Leveraging this insight, the team developed a biomarker that predicted with high accuracy whether a patient&#8217;s tumor was more likely to respond to immunotherapy or to chemotherapy, which is currently used as a second-line treatment when BCG fails or is unavailable. Joseph Liao, MD, the Kathryn Simmons Stamey Professor and chair of the department of urology, shares senior authorship of the study with Diehn and Alizadeh, and emphasized the stakes involved in getting these treatment decisions right.</p>
<p>The supply dynamics of BCG make this predictive capability especially valuable. BCG, a weakened strain of the bacterium used in tuberculosis vaccines, is instilled directly into the bladder through a catheter once a week for six weeks, with maintenance courses that may continue for up to three years. It works by stimulating the patient&#8217;s immune system to destroy lingering cancer cells, but it does not work for everyone, since some tumors simply lack the underlying immune activity needed to mount an effective response. Critically, BCG is manufactured by a single global supplier, and shortages are common, forcing urologists to ration doses among patients. A validated version of the test could allow doctors to reserve BCG for those most likely to benefit while moving other patients to chemotherapy sooner, sparing them months of ineffective therapy.</p>
<p>The researchers plan to validate uRARE-seq in larger, prospective trials at multiple centers, with the aim of bringing personalized treatment to bladder cancer patients. Liao pointed out that there are currently no biomarkers at all recommended or approved for surveillance in bladder cancer, and that the existing treatments are incredibly taxing, both physically and financially; guiding those choices, he said, has the potential to help both patients and clinicians. Researchers from Resero Bio, a Stanford spinout based in San Carlos formed to commercialize the technology, and the VA Palo Alto Health Care System contributed to the study. The work was funded by the National Institutes of Health, the Stanford ACED Canary Fellowship, the Tobacco-Related Disease Research Program, and the Virginia and D.K. Ludwig Fund for Cancer Research, among other sources, and several authors hold ownership interests in Resero Bio or related patents and consulting roles.</p>
<p><strong>Subject of Research:</strong> Urine cell-free RNA sequencing for bladder cancer detection and treatment response prediction</p>
<p><strong>Article Title:</strong> Urine test may improve bladder cancer diagnosis and guide treatment decisions</p>
<p><strong>Article References:</strong> Urine test may improve bladder cancer diagnosis and guide treatment decisions. (n.d.). <a href="https://www.eurekalert.org/news-releases/1146166" rel="noopener noreferrer">Original publication</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> Not provided</p>
<p><strong>Keywords:</strong> bladder cancer, liquid biopsy, urine test, cell-free RNA, uRARE-seq, BCG immunotherapy, chemotherapy, biomarker, cystoscopy, Nature Medicine, Stanford Medicine, precision oncology</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">231266</post-id>	</item>
		<item>
		<title>Scientists Find Urine Biomarkers That Reveal Which Children Need Kidney Surgery</title>
		<link>https://scienmag.com/scientists-find-urine-biomarkers-that-reveal-which-children-need-kidney-surgery/</link>
		
		<dc:creator><![CDATA[Ophelia Keating]]></dc:creator>
		<pubDate>Tue, 22 Sep 2026 20:26:23 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[beta-alanine metabolism]]></category>
		<category><![CDATA[Biomarkers]]></category>
		<category><![CDATA[biomarkers predicting kidney function decline in children]]></category>
		<category><![CDATA[clinical management of ureteropelvic junction obstruction]]></category>
		<category><![CDATA[congenital urinary tract anomalies diagnostic tools]]></category>
		<category><![CDATA[early detection of fetal hydronephrosis]]></category>
		<category><![CDATA[GC–MS]]></category>
		<category><![CDATA[HPLC-MS]]></category>
		<category><![CDATA[hydronephrosis]]></category>
		<category><![CDATA[kidney failure risk assessment in children]]></category>
		<category><![CDATA[kidney obstruction]]></category>
		<category><![CDATA[Metabolomics]]></category>
		<category><![CDATA[metabolomics in pediatric nephrology]]></category>
		<category><![CDATA[molecular fingerprinting of ureteropelvic junction obstruction]]></category>
		<category><![CDATA[non-invasive urine testing for kidney surgery needs]]></category>
		<category><![CDATA[Oxidative stress]]></category>
		<category><![CDATA[pediatric urology]]></category>
		<category><![CDATA[pyeloplasty]]></category>
		<category><![CDATA[untargeted metabolomics in pediatric kidney diseases]]></category>
		<category><![CDATA[ureteropelvic junction obstruction]]></category>
		<category><![CDATA[urinary molecular signatures for]]></category>
		<category><![CDATA[urine biomarkers for pediatric kidney obstruction]]></category>
		<category><![CDATA[urine test]]></category>
		<category><![CDATA[urine-based diagnostics for congenital kidney conditions]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=207735</guid>

					<description><![CDATA[An untargeted metabolomics study of Brazilian children identified 94 urinary metabolites, including five that distinguish surgical from non-surgical ureteropelvic junction obstruction, pointing toward a non-invasive test to guide treatment decisions.]]></description>
										<content:encoded><![CDATA[<p>A simple urine test could one day tell doctors which children with a blocked kidney need surgery and which can safely be watched, thanks to a new study that mapped the molecular fingerprints of one of the most common birth defects of the urinary tract. Researchers in Brazil have used an untargeted metabolomics strategy, combining two powerful analytical platforms, to reveal a set of small molecules in urine that change in a highly characteristic way as congenital blockage at the ureteropelvic junction progresses from a harmless finding to a genuine threat to kidney function. The work, carried out at the Hospital das Clínicas of the University of São Paulo Medical School, offers the most comprehensive molecular portrait to date of ureteropelvic junction obstruction, or UPJO, in children.</p>
<p>UPJO is no rarity. Fetal hydronephrosis, the swelling of the kidney caused by urine accumulating behind a blockage, is detected in roughly 0.25 to 1 percent of pregnancies by routine antenatal ultrasound, and UPJO is the most commonly diagnosed congenital urinary tract anomaly, affecting about one in 1,500 live births. It remains the leading cause of kidney failure in infants and children. Yet the condition is notoriously difficult to manage because it behaves like a spectrum rather than a single disease. Some children harbor an obstruction that silently destroys the kidney, while others carry a dilation that never causes harm. Approximately 20 percent of affected children will eventually need surgery, but deciding which ones has long been a source of controversy among pediatric urologists.</p>
<p>Current diagnostic practice relies on ultrasound measurements of the renal pelvis, nuclear medicine scans that assess differential kidney function and urinary drainage, and the appearance of symptoms such as pain, infection or blood in the urine. Severe obstruction demands surgical repair, typically the Anderson-Hynes dismembered pyeloplasty, to prevent irreversible loss of renal function, whereas children with non-obstructive hydronephrosis can be followed conservatively for years. The problem is that these imaging-based reference standards are unsatisfactory at predicting which asymptomatic patients will deteriorate. Several candidate protein biomarkers, including retinol-binding protein-4, NGAL, KIM-1, TGF-beta 1, MCP-1, endothelin-1 and epidermal growth factor, have been screened over the years, but none has entered clinical practice due to modest performance and limited availability.</p>
<p>The Brazilian team took a different route. Instead of examining proteins or genes, they turned to metabolomics, the comparative study of the complete set of low-molecular-weight metabolites, the metabolome, expressed under given conditions. Because metabolites sit at the downstream end of biology, their patterns can integrate the effects of genes, proteins and environment, making them sensitive reporters of tissue stress and injury. The researchers reasoned that a blocked kidney under pressure, and one that is merely dilated but functioning normally, should leave distinguishable chemical traces in the urine. To maximize metabolome coverage, they employed two orthogonal analytical techniques: gas chromatography coupled to mass spectrometry, ideal for volatile organic acids and derivatized small molecules, and high-performance liquid chromatography coupled to high-resolution quadrupole time-of-flight mass spectrometry with electrospray ionization, which captures a broader range of polar and semi-polar compounds.</p>
<p>The prospective observational study, approved by the local ethics committee and conducted between September 2016 and June 2019, enrolled 37 children aged 2 to 12 years in three age-matched groups. Ten children had established obstructive hydronephrosis and underwent pyeloplasty based on accepted guideline criteria, including symptomatic obstruction, differential renal function below 40 percent, a drop of more than 10 percent in renal function on serial scans, or poor drainage after diuretic challenge. Fifteen asymptomatic children with non-obstructive hydronephrosis were managed conservatively and remained clinically and radiologically stable throughout follow-up. Twelve healthy children without any urinary tract problems served as controls. All patients had normal estimated glomerular filtration rates above 90 ml/min/1.73 m2, underscoring that the molecular changes detected reflect early, subclinical perturbation rather than overt renal failure. Urine samples were collected aseptically, centrifuged, stored at minus 80 degrees Celsius, and screened for infection before analysis.</p>
<p>The analytical workflow was exacting. For gas chromatography, urine was treated with urease to remove urea, proteins were precipitated with cold isopropanol, and dried extracts underwent methoximation with methoxyamine hydrochloride and silylation with BSTFA before injection onto a 5-percent-phenyl-methylpolysiloxane capillary column. Liquid chromatography separated compounds on a pentafluorophenyl column with a formic acid-methanol gradient, and mass accuracy was maintained with continuous lock-mass infusion. Quality control samples, pools of all study urines, were injected after every five regular samples, and only features with relative standard deviations below 30 percent in these pools proceeded to identification. This dual-platform design proved crucial: in one comparison, the supervised multivariate model failed to separate groups using GC-MS data alone, yet the univariate approach on the same data revealed significant metabolites, and the HPLC-MS platform compensated where GC-MS was blind.</p>
<p>Statistically, the study was rigorous for a pilot of this size. Univariate analyses using ANOVA with Tukey post-hoc testing and Benjamini-Hochberg false discovery rate correction, together with multivariate partial least-squares discriminant analysis validated by 7-fold cross-validation, 200-permutation testing and CV-ANOVA, produced strong performance metrics: adjusted p-values below 0.05, q-values between 0.04 and 0.1, and areas under the receiver operating characteristic curve ranging from 0.662 to 0.882 for univariate findings, and from 0.923 to 0.995 for multivariate models, with Q-squared prediction values between 0.714 and 0.859. Out of 94 discriminatory metabolites identified across all group comparisons, 17 achieved particular significance because they were confirmed jointly by both univariate and multivariate methods, the strongest statistical evidence the design could provide.</p>
<p>The chemistry told a coherent biological story. Comparing non-obstructive hydronephrosis with controls, three metabolites, 1-methylhistidine and 3-methylhistidine, 1-methylhistamine and 3-methylhistamine, and the dipeptide glutamyl-hydroxyproline, emerged as markers of the earliest metabolic perturbation implanted by the obstruction. Nine metabolites, including mandelic acid, pantothenic acid, furoylglycine, gluconic acid, 3-hydroxyphenylacetate, 4-hydroxyphenylacetate, 3-hydroxy-3-methylglutaric acid, pentose alcohols and tagalose, distinguished obstructive cases from controls, reflecting the long-term metabolic impact of established blockage. Cystine and methionine sulfoxide showed the largest fold increases of all, at 156 and 152 percent respectively, in obstructive versus control children, hinting at profound oxidative stress and protein oxidation. Most clinically compelling, five metabolites, ascorbic acid, furoylglycine, gluconic acid, pentoses and threitol, separated the children who required surgery from those who did not, and therefore constitute the leading candidates for a decision-support biomarker panel. In pathway analyses, beta-alanine metabolism was the only route significantly altered at early stages, consistent with a developing antioxidant defense, and its progression implicated tyrosine, phenylalanine, alanine, aspartate, glutamate, and amino sugar and nucleotide sugar metabolisms as the disease advanced.</p>
<p>Some of the individual findings carry mechanistic weight. Beta-alanine was decreased by 36 percent in the obstructive versus non-obstructive comparison, and pantothenic acid, a coenzyme A precursor with membrane-protective properties, fell by 49 and 59 percent against controls, reinforcing the link between obstruction and mounting oxidative burden on the podocytes of the glomerular filter. 4-Hydroxyphenylacetic acid, a key metabolite of the tyrosine and phenylalanine pathways, rose by 112 percent in obstructive versus non-obstructive children and 84 percent against controls, and had already been associated with declining renal function and podocyte injury elsewhere; recent work also suggests it can protect renal tubular cells from necroptosis during sepsis. Disturbances in the amino sugar pathway, with alpha-glucosamine 1-phosphate elevated and N-acetyl-D-mannosamine, the precursor of sialic acids essential to the glomerular filtration barrier, depleted in the surgical group, connect the metabolite signature directly to the structural integrity of the kidney filter.</p>
<p>The authors are candid that this exploratory study was not designed to deliver a definitive clinical biomarker, and that the modest cohort size and age range limit generalizability. Even so, the convergence of two analytical platforms, validated statistics and biologically plausible pathways lends the 94-metabolite signature considerable credibility as a diagnostic and prognostic scaffold. The team emphasizes that larger cohorts for external validation, targeted quantitative assays and biological testing are the necessary next steps before any of these molecules reaches the clinic. If that validation succeeds, the dream of a non-invasive urine test that spares asymptomatic children unnecessary surgery while protecting those with true obstruction from silent kidney loss may move a decisive step closer to reality.</p>
<p><strong>Subject of Research:</strong> Urinary metabolomics profiling of children with ureteropelvic junction obstruction to identify biomarkers of obstructive hydronephrosis</p>
<p><strong>Article Title:</strong> Urinary metabolomics profile in children with ureteropelvic junction obstruction</p>
<p><strong>Article References:</strong> da Silva, L. H. F., Mello, M. F., Kataoka, F. G. H., Amsei Filho, U. F., Farah, J. P. S., Yamaguchi, L. F., Kato, M. J., de Oliveira, M. A. L., Faccio, A. T., Andrade, L., Dénes, F. T., Lopes, R. I., &amp; Tavares, M. F. M. (2026). Urinary metabolomics profile in children with ureteropelvic junction obstruction. <em>Metabolomics, 22</em>(5), Article 154. <a href="https://doi.org/10.1007/s11306-026-02527-0" rel="noopener noreferrer">https://doi.org/10.1007/s11306-026-02527-0</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s11306-026-02527-0" rel="noopener noreferrer">10.1007/s11306-026-02527-0</a></p>
<p><strong>Keywords:</strong> metabolomics, ureteropelvic junction obstruction, hydronephrosis, biomarkers, pediatric urology, GC-MS, HPLC-MS, urine test, kidney obstruction, pyeloplasty, oxidative stress, beta-alanine metabolism</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">207735</post-id>	</item>
		<item>
		<title>Urine Proteomics Test Outperforms PSA in Detecting Dangerous Prostate Cancer</title>
		<link>https://scienmag.com/urine-proteomics-test-outperforms-psa-in-detecting-dangerous-prostate-cancer/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 21:51:01 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[advantages of urine proteomics over PSA testing]]></category>
		<category><![CDATA[Biomarkers]]></category>
		<category><![CDATA[biomarkers for clinically significant prostate cancer]]></category>
		<category><![CDATA[biopsy]]></category>
		<category><![CDATA[Cancer diagnostics]]></category>
		<category><![CDATA[capillary electrophoresis–mass spectrometry in cancer diagnosis]]></category>
		<category><![CDATA[Clinical validation]]></category>
		<category><![CDATA[comparison of urine test and PSA accuracy]]></category>
		<category><![CDATA[early detection of aggressive prostate tumors]]></category>
		<category><![CDATA[liquid biopsy]]></category>
		<category><![CDATA[mass spectrometry]]></category>
		<category><![CDATA[molecular fingerprint urine test for prostate cancer]]></category>
		<category><![CDATA[mpMRI]]></category>
		<category><![CDATA[non-invasive prostate cancer screening methods]]></category>
		<category><![CDATA[Overdiagnosis and overtreatment in prostate cancer]]></category>
		<category><![CDATA[PI-RADS]]></category>
		<category><![CDATA[prostate cancer]]></category>
		<category><![CDATA[Proteomics]]></category>
		<category><![CDATA[PSA]]></category>
		<category><![CDATA[urine proteomics prostate cancer detection]]></category>
		<category><![CDATA[urine test]]></category>
		<category><![CDATA[urine-based biomarker panel for prostate cancer risk assessment]]></category>
		<category><![CDATA[validation of urine proteomics test in biopsy-naïve men]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=198876</guid>

					<description><![CDATA[A prospectively validated urine-based proteomics test significantly outperformed PSA, MRI-based benchmarks, and risk calculators in predicting clinically significant prostate cancer in biopsy-naïve men, potentially sparing many patients unnecessary biopsies.]]></description>
										<content:encoded><![CDATA[<p>A simple urine test that reads the molecular fingerprints of hundreds of tiny protein fragments has, for the first time, been prospectively validated in men who had never undergone a prostate biopsy, and the results suggest it could spare countless patients an invasive procedure they never needed. The study, published in the British Journal of Cancer, evaluated a 19-biomarker model built on capillary electrophoresis–mass spectrometry (CE-MS), a technology that separates and measures peptides in urine with high precision. In a cohort of 161 biopsy-naïve men at risk for clinically significant prostate cancer, the test achieved an area under the receiver operating characteristic curve (AUC) of 0.79, dramatically outperforming prostate-specific antigen (PSA), which managed only an AUC of 0.54 in the same population. The difference was statistically overwhelming, with a p-value below 0.0001.</p>
<p>The problem the researchers set out to solve is one of the most persistent dilemmas in urologic oncology. PSA, the workhorse of prostate cancer screening for more than three decades, cannot reliably distinguish slow-growing tumors that may never harm a patient from aggressive cancers that demand immediate treatment. The consequence is a diagnostic cycle of overdiagnosis and overtreatment: elevated PSA triggers magnetic resonance imaging, and suspicious findings or persistent uncertainty lead to needle biopsies that frequently detect only indolent disease, or nothing at all. Meanwhile, a minority of genuinely dangerous cancers slip through the cracks. Clinically significant prostate cancer, defined by tumor grade and volume thresholds that correlate with metastasis and death, is the target that any meaningful diagnostic must hit without flagging every benign enlargement of the gland.</p>
<p>The 19-biomarker model approaches the problem from an entirely different angle. Rather than relying on a single protein produced by prostate tissue, it analyzes a panel of urinary peptides, fragments of proteins shed into urine as they are filtered through the kidneys or released from the urinary tract. Proteolysis, the enzymatic cleavage of proteins, is altered in cancer, and the resulting peptide patterns act as a downstream readout of tumor biology. Capillary electrophoresis separates these peptides with extraordinary resolution, and mass spectrometry identifies and quantifies each one by its mass-to-charge ratio. The 19 selected markers, combined into a weighted score, capture this proteolytic signature of malignancy in a non-invasive sample that patients provide without needles, discomfort, or radiation.</p>
<p>The prospective design is what gives the new findings their weight. Biomarker studies often falter when moved from retrospective datasets, where models are trained and tested on the same or similar patients, into real-world clinical settings. Here, consecutive biopsy-naïve patients with clinical suspicion of prostate cancer at two major Spanish hospitals underwent urine collection, multiparametric magnetic resonance imaging (mpMRI), and standard biopsy, allowing the test&#8217;s performance to be measured against gold-standard pathology rather than against itself. The researchers benchmarked the 19-biomarker model not only against PSA but also against the ERSPC risk calculator, prostate-specific antigen density (PSAD), and mpMRI. Every comparison favored the urine test: ERSPC reached an AUC of 0.63 (p = 0.0108), PSAD 0.61 (p = 0.0021), and mpMRI 0.65 (p = 0.0069), all substantially below the proteomics score.</p>
<p>Perhaps the most clinically striking result emerged in the subgroup of men whose mpMRI scans showed low PI-RADS scores, meaning radiologists saw little or nothing suspicious on imaging. In these patients, where the traditional pathway would often reassure both doctor and patient, the 19-biomarker model detected clinically significant cancer with 75 percent sensitivity and 90 percent specificity. This matters because MRI-invisible tumors are a recognized blind spot of modern diagnostics; studies have shown that a meaningful fraction of significant cancers go undetected when biopsy decisions rest solely on imaging findings. A urine test that can flag danger the scanner misses offers a genuine safety net, potentially catching aggressive disease before it has the chance to progress beyond cure.</p>
<p>The study also prospectively validated a previously described nomogram that combines the proteomics score with mpMRI results. The combined model achieved an AUC of 0.82, with 90 percent specificity and 64 percent sensitivity for clinically significant disease. The logic of this integration is important: imaging excels at locating lesions and estimating their burden, while the proteomic signature reflects biological aggressiveness independent of what is visible on the scan. Fusing the two layers of information produces a risk estimate more accurate than either alone, mirroring a broader shift in oncology toward multimodal risk stratification, where molecular, imaging, and clinical data are woven into a single decision framework.</p>
<p>To probe whether the test reflects true disease biology rather than statistical noise, the team turned to 100 patients who underwent radical prostatectomy, the surgical removal of the prostate. They correlated preoperative urine scores with the final pathology of the excised gland, including the International Society of Urological Pathology (ISUP) grade groups. The association between higher biomarker scores and more aggressive tumor features provides biological plausibility for the diagnostic signal, suggesting that the urinary peptides are not merely markers of prostate enlargement or inflammation but genuine echoes of malignant transformation and tumor grade.</p>
<p>Performance metrics alone do not determine clinical value; what matters is whether a test changes decisions in ways that benefit patients. A sensitivity of 75 percent and specificity of 90 percent in MRI-low-suspicion patients means that a negative urine result would allow many men to safely defer biopsy, avoiding the bleeding, infection, and sexual and urinary side effects that accompany prostate needle procedures, while a positive result directs resources toward those most likely to harbor significant disease. At the population level, where millions of men undergo PSA testing annually and a substantial fraction proceed to MRI and biopsy, even modest reductions in unnecessary procedures would translate into enormous savings in morbidity, anxiety, and healthcare expenditure.</p>
<p>The road from validation to routine practice still requires broader, multi-center, ethnically diverse cohorts and regulatory assessment, and the authors acknowledge limitations inherent in any single-center-pair study of moderate size. Yet the prospect of a urine-based test that rivals and exceeds the performance of PSA, risk calculators, and imaging represents a genuine inflection point in prostate cancer diagnostics. As proteomics matures from a discovery science into a clinical discipline, the 19-biomarker model stands as a demonstration that the molecular information flowing quietly through the human urinary tract can be harnessed to answer one of medicine&#8217;s most consequential questions: which cancers need to be found, and which needles can finally be left in the drawer.</p>
<p><strong>Subject of Research:</strong> Prospective clinical validation of a urine-based proteomics biomarker test for predicting clinically significant prostate cancer in biopsy-naïve patients</p>
<p><strong>Article Title:</strong> Prospective validation of a urine-based proteomics test for predicting clinically significant prostate cancer in biopsy-naïve patients</p>
<p><strong>Article References:</strong> Morillo, A. C., Jobre, K. N., Lendinez Cano, G., Blanca-Pedregosa, A., Lopez Ruiz, D., Parada, J., Heidegger, I., Culig, Z., Lopez-Beltran, A., Carrasco-Valiente, J., Mischak, H., Medina, R. A., Campos Hernandez, J. P., Frantzi, M., &amp; Gómez Gómez, E. (2026). Prospective validation of a urine-based proteomics test for predicting clinically significant prostate cancer in biopsy-naïve patients. <em>British Journal of Cancer</em>. <a href="https://doi.org/10.1038/s41416-026-03602-y" rel="noopener noreferrer">https://doi.org/10.1038/s41416-026-03602-y</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1038/s41416-026-03602-y" rel="noopener noreferrer">10.1038/s41416-026-03602-y</a></p>
<p><strong>Keywords:</strong> prostate cancer, urine test, proteomics, biomarkers, PSA, mass spectrometry, mpMRI, biopsy, clinical validation, cancer diagnostics, PI-RADS, liquid biopsy</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">198876</post-id>	</item>
	</channel>
</rss>
