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	<title>Transformer model &#8211; Science</title>
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	<title>Transformer model &#8211; Science</title>
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		<title>AI Models Forecast Leishmaniasis Decline in Ethiopia but Warn WHO 2030 Target Will Be Missed</title>
		<link>https://scienmag.com/ai-models-forecast-leishmaniasis-decline-in-ethiopia-but-warn-who-2030-target-will-be-missed/</link>
		
		<dc:creator><![CDATA[Blake Davidson]]></dc:creator>
		<pubDate>Mon, 19 Oct 2026 19:31:15 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[AI-based disease modeling for leishmaniasis in Ethiopia]]></category>
		<category><![CDATA[ARIMA]]></category>
		<category><![CDATA[challenges in achieving WHO 2030 goals]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning epidemiological forecasts]]></category>
		<category><![CDATA[epidemiology]]></category>
		<category><![CDATA[Ethiopia]]></category>
		<category><![CDATA[future disease control strategies in]]></category>
		<category><![CDATA[global burden of disease]]></category>
		<category><![CDATA[Global Burden of Disease data utilization]]></category>
		<category><![CDATA[health data analysis using AI]]></category>
		<category><![CDATA[impact of artificial intelligence on tropical disease prediction]]></category>
		<category><![CDATA[leishmaniasis]]></category>
		<category><![CDATA[long-term leishmaniasis incidence decline in Ethiopia]]></category>
		<category><![CDATA[LSTM]]></category>
		<category><![CDATA[neglected tropical disease trend analysis]]></category>
		<category><![CDATA[neglected tropical diseases]]></category>
		<category><![CDATA[projections of disease burden reduction]]></category>
		<category><![CDATA[time-series forecasting]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[visceral leishmaniasis]]></category>
		<category><![CDATA[visceral leishmaniasis (kala-azar) epidemiology]]></category>
		<category><![CDATA[WHO leishmaniasis elimination targets]]></category>
		<category><![CDATA[WHO roadmap 2030]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=314749</guid>

					<description><![CDATA[A new deep learning study projects that leishmaniasis incidence in Ethiopia will fall to about 84 cases per 100,000 by 2030, but warns the country will still miss the WHO's 60 percent reduction target.]]></description>
										<content:encoded><![CDATA[<p>A team of Ethiopian researchers has harnessed some of the most advanced tools in artificial intelligence to chart the future of one of the world&#8217;s deadliest neglected tropical diseases, and the results carry both reassurance and a stark warning. By training deep learning models on more than three decades of epidemiological data, the scientists projected that leishmaniasis incidence in Ethiopia will continue its long decline through 2030, falling to roughly 84 cases per 100,000 people. Yet even that optimistic trajectory, the analysis concludes, will leave the country short of the World Health Organization&#8217;s ambitious target of cutting leishmaniasis incidence by at least 60 percent by the end of the decade.</p>
<p>The study, published in Discover Artificial Intelligence, drew on the Global Burden of Disease 2021 database, which compiles standardized estimates of disease incidence, prevalence and mortality for 204 countries and territories. The researchers extracted annual leishmaniasis incidence rates for Ethiopia spanning 1990 to 2021, covering all clinical forms of the disease, including the visceral form known as kala-azar, which is fatal without timely treatment. The data revealed a dramatic long-term downward trend: incidence plummeted from 768.091 cases per 100,000 people in 1990 to 86.820 by 2021, a decline of nearly 89 percent over three decades.</p>
<p>What distinguishes this analysis is its head-to-head comparison of five forecasting architectures, ranging from classical statistics to cutting-edge neural networks. The team built an autoregressive integrated moving average model, the workhorse of traditional time-series analysis, using the statsmodels and pmdarima libraries in Python. Against it they pitted a standard Long Short-Term Memory network, a multistep LSTM variant designed for multi-horizon prediction, a hybrid ARIMA-LSTM framework in which the statistical model captures linear structure while the neural network learns nonlinear residuals, and finally a Transformer model equipped with multi-head self-attention mechanisms and positional encoding to capture long-range temporal dependencies across the entire series.</p>
<p>The technical pipeline was rigorous. Raw incidence values were rescaled to a range between zero and one using MinMax normalization to stabilize neural network training, and the univariate series was converted into a supervised learning format through a sliding-window approach that generated input-target pairs while preserving temporal dependencies. Before fitting the ARIMA model, the researchers tested stationarity with the Augmented Dickey-Fuller test, obtaining a statistic of minus 1.51 and a p-value of 0.52, confirming the series was non-stationary and required differencing. Autocorrelation and partial autocorrelation plots then identified ARIMA(1, 1, 0) as the optimal specification. Deep learning components were constructed in TensorFlow 2.x with the Keras API, with hyperparameters tuned through grid search and time-series cross-validation, and overfitting controlled through early stopping, dropout regularization and temporally ordered train-test splits.</p>
<p>When the models were evaluated on held-out test data, the Transformer emerged as the clear winner. It achieved a mean absolute error of 9.55, a root mean square error of 10.075, a mean absolute percentage error of 12.78 percent and a symmetric mean absolute percentage error of 13.04 percent, meaning its predictions deviated from observed values by fewer than ten cases per 100,000 on average. The multistep LSTM came second with a mean absolute error of 12.13, while the basic LSTM performed worst among the neural approaches at 17.79. The classical ARIMA model trailed the field entirely, with a mean absolute error of 13.52 and a mean absolute percentage error of 16.55 percent, underscoring the limits of linear assumptions when confronted with the complex, nonlinear dynamics of an epidemic time series.</p>
<p>Applying the best-performing Transformer to the future, the researchers forecast a continued but modest decline, with incidence reaching approximately 84.198 cases per 100,000 people by 2030. That trajectory, while encouraging, falls short of the WHO Neglected Tropical Diseases Roadmap 2021-2030, which calls for reducing fatalities from primary visceral leishmaniasis to below 1 percent in 56 countries by 2025 and in 64 countries by 2030, alongside a 60 percent reduction in incidence. The authors frame this shortfall not merely as a statistical projection but as a pressing call to action, arguing that current interventions must be significantly expanded in scale and intensity to meet the global objective.</p>
<p>The analysis also dissected the burden by age and geography, revealing sharp disparities that carry direct policy implications. Children under five experienced the highest incidence rates of any age group, exceeding 900 cases per 100,000 people on average between 1990 and 2021, with the 5-to-9-year group close behind at nearly 700. Regionally, the northern highlands of Amhara and Tigray recorded dramatically elevated incidence in the early 1990s, with rates declining sharply after 1995, while areas such as Addis Ababa, Afar and Dire Dawa remained consistently low throughout. The forecast suggests a possible slight uptick in the Somali region, while most other regions are projected to remain stable through 2030.</p>
<p>The concentration of disease is striking. More than 60 percent of Ethiopia&#8217;s visceral leishmaniasis cases occur in the northern lowland foci of Amhara and Tigray, and the country reports an estimated 3,700 to 7,400 visceral cases annually, along with roughly 50,000 new cutaneous cases. Seasonal migrant laborers who travel to endemic zones for planting and harvesting represent the highest-risk group and also exhibit the world&#8217;s highest rate of HIV-leishmaniasis coinfection, at approximately 20 percent. In long-standing endemic areas, around 60 percent of cases occur in children under 15. Historical treatment data from 2009 to 2015 showed an overall case fatality rate of 4 percent, ranging from 0.9 percent in 2014 to 7.4 percent in 2013, figures that remain far above the WHO&#8217;s sub-1 percent goal.</p>
<p>The study&#8217;s findings align with a growing international literature demonstrating the superiority of deep learning for epidemic forecasting. Comparable analyses in India and Sudan have shown that LSTM and hybrid models outperform classical methods in predicting visceral leishmaniasis incidence by capturing nonlinear trends and seasonality, while studies in Brazil found that deep learning surpassed ARIMA for both cutaneous and visceral forms in settings with complex environmental drivers. East Africa now accounts for nearly 45 percent of global visceral leishmaniasis cases, and the disease remains endemic in 78 countries, disproportionately affecting impoverished and conflict-affected communities. Disruptions since 2019, including migration, political instability and the COVID-19 pandemic, have further hampered diagnosis and treatment across the region.</p>
<p>The authors are candid about the limitations of their approach. The analysis relies on historical incidence data that may be affected by underreporting, particularly in remote or conflict-affected areas, and the models are univariate, meaning they exclude climatic conditions, vector control efforts and political instability, all of which influence transmission. National-level aggregation may also mask localized heterogeneity, and the absence of established deep learning benchmarks for Ethiopia complicates direct performance comparisons. Even so, the researchers argue that the work validates advanced forecasting tools for public health planning and offers health ministries a data-driven baseline for tracking progress. Their recommendations are concrete: scaled-up targeted mass screening in Amhara and Tigray, strengthened surveillance networks, improved diagnostics, expanded vector control, and conflict-sensitive programming that builds health systems capable of withstanding the shocks that have repeatedly reversed hard-won gains against this neglected disease.</p>
<p><strong>Subject of Research:</strong> Forecasting leishmaniasis incidence in Ethiopia using deep learning models and Global Burden of Disease 2021 data</p>
<p><strong>Article Title:</strong> Forecasting the incidence of leishmaniasis in Ethiopia using global burden of disease 2021 data</p>
<p><strong>Article References:</strong> Kelkay, J. M., Alemu, E. A., Alemayehu, M. A., Arage, F. G., Gessese, R. T., Tadese, Z. B., Tsegaw, T. K., &amp; Taye, E. A. (2026). Forecasting the incidence of leishmaniasis in Ethiopia using global burden of disease 2021 data. <em>Discover Artificial Intelligence, 6</em>(1), Article 1196. <a href="https://doi.org/10.1007/s44163-026-02283-z" rel="noopener noreferrer">https://doi.org/10.1007/s44163-026-02283-z</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s44163-026-02283-z" rel="noopener noreferrer">10.1007/s44163-026-02283-z</a></p>
<p><strong>Keywords:</strong> leishmaniasis, visceral leishmaniasis, Ethiopia, deep learning, Transformer model, LSTM, ARIMA, time series forecasting, Global Burden of Disease, neglected tropical diseases, WHO roadmap 2030, epidemiology</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">314749</post-id>	</item>
		<item>
		<title>AI Watches the Wind and Sun: Transformer Model Learns to Spot Grid Anomalies</title>
		<link>https://scienmag.com/ai-watches-the-wind-and-sun-transformer-model-learns-to-spot-grid-anomalies/</link>
		
		<dc:creator><![CDATA[Blake Davidson]]></dc:creator>
		<pubDate>Sun, 18 Oct 2026 09:46:09 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[AI for grid reliability in renewable energy]]></category>
		<category><![CDATA[anomaly detection]]></category>
		<category><![CDATA[attention mechanism]]></category>
		<category><![CDATA[class imbalance]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning for renewable energy]]></category>
		<category><![CDATA[environmental variability impact on renewable energy]]></category>
		<category><![CDATA[fault detection]]></category>
		<category><![CDATA[fault detection in solar-wind plants]]></category>
		<category><![CDATA[GRU]]></category>
		<category><![CDATA[LSTM]]></category>
		<category><![CDATA[machine learning for energy system diagnostics]]></category>
		<category><![CDATA[multivariate time series anomaly detection]]></category>
		<category><![CDATA[real-time anomaly detection in power grids]]></category>
		<category><![CDATA[Renewable Energy]]></category>
		<category><![CDATA[renewable energy anomaly detection]]></category>
		<category><![CDATA[renewable energy fault diagnosis]]></category>
		<category><![CDATA[sensor data analysis in renewable infrastructure]]></category>
		<category><![CDATA[smart grid]]></category>
		<category><![CDATA[solar wind power grid monitoring]]></category>
		<category><![CDATA[solar-wind integration]]></category>
		<category><![CDATA[time series]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[transformer-based sensor data analysis]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=305139</guid>

					<description><![CDATA[Researchers in India built a transformer-based deep learning system to detect anomalies in solar-wind power plants, achieving strong reconstruction accuracy while exposing a critical weakness in catching rare faults.]]></description>
										<content:encoded><![CDATA[<p>Deep learning models built on the transformer architecture, the same family of neural networks that powers modern language systems, are being pointed at a very different kind of sequence: the streams of sensor data flowing from hybrid solar-wind power plants. In a study published in Scientific Reports, Ritika Asati of COEP Technological University in Pune and Vikas Khare of NMIMS Deemed to be University in Indore describe a transformer-based framework designed to detect anomalies in integrated solar-wind energy infrastructure, using real-world multivariate time series data collected from a renewable energy facility in Kayathar, in the southern Indian state of Tamil Nadu.</p>
<p>The motivation is straightforward. As solar and wind generation make up a growing share of electricity supply, grid operators face reliability problems rooted in the complex spatial and temporal behavior of these variable resources. Environmental conditions shift hour by hour, equipment degrades, sensors fail, and unusual operating conditions arise without warning. A fault that would be obvious in a conventional plant can hide inside the natural variability of a renewable fleet, where a dip in output might mean a passing cloud, a lull in wind, or a genuine equipment malfunction. Telling those cases apart automatically is the core challenge the researchers set out to address.</p>
<p>The framework follows a pipeline that begins with data preparation and normalization, converting raw plant measurements into a consistent numerical format that a neural network can digest. The continuous sensor stream is then chopped into overlapping segments through a sliding window procedure, producing a set of sequences that preserve temporal order while giving the model many training examples. Anomaly labels were created using domain knowledge, encoding what engineers understand about how faults and failures actually manifest in solar-wind facilities rather than relying purely on statistical outliers.</p>
<p>At the heart of the system sits a transformer encoder enhanced with multi-head self-attention. Unlike recurrent networks that process a sequence step by step, transformers attend to every point in a window simultaneously, learning which moments in time matter for interpreting the present. Multi-head self-attention allows the model to weigh several different relationships in parallel, potentially capturing how a sudden change in wind speed interacts with grid-side measurements, or how temperature drift combines with radiation readings to signal a problem. The attention weights also serve an interpretive role, offering a window into which variables and time steps the model considers significant when it judges a segment abnormal.</p>
<p>To benchmark the approach, the team compared the transformer against three established deep learning baselines for time series: the long short-term memory network (LSTM), the gated recurrent unit network (GRU), and a hybrid convolutional-recurrent architecture (CNN-LSTM). Evaluation used three metrics: mean squared error (MSE), which measures how accurately each model reconstructs or predicts the data; accuracy, the fraction of correct classifications; and ROC-AUC, a threshold-independent measure of how well a model separates normal from abnormal cases.</p>
<p>The transformer delivered the lowest reconstruction error by a clear margin, with an MSE of 0.00641 compared with 0.00831 for LSTM, 0.00859 for GRU, and 0.00792 for CNN-LSTM. It also achieved a classification accuracy of 95 percent and a ROC-AUC of 0.89. On the surface, those numbers suggest a system ready for deployment, capable of learning the normal operating signature of a hybrid plant and flagging deviations with high fidelity.</p>
<p>But the study&#8217;s most instructive finding lies in what that accuracy conceals. At the default classification threshold, the reported accuracy was driven almost entirely by the majority class of normal operating data. In the confusion-matrix evaluation, the model failed to identify any of the ten labelled anomalies in the test set, yielding a recall of zero percent for the anomaly class. The test data suffered from a severe class imbalance of 18.8 normal samples for every anomalous one, meaning a model that simply predicts &#8220;normal&#8221; every time scores highly while catching nothing. The authors are explicit about this limitation, and it is a caution that applies across the growing literature on machine learning for grid monitoring: headline accuracy can mask complete failure on the rare events that matter most.</p>
<p>This imbalance problem is not unique to this dataset. Genuine faults in power infrastructure are, fortunately, rare, which means any model trained on naturally occurring data sees far more normal than abnormal behavior. Techniques such as resampling, cost-sensitive loss functions, synthetic anomaly generation, and careful threshold tuning are standard responses, and the anomaly creation procedure based on domain knowledge in this study represents one step in that direction. The zero-recall result at the default threshold underscores that the threshold itself, not just the architecture, determines whether a detector is useful in practice.</p>
<p>Beyond detection, the study contributes an analysis of the relationships the model learned. Correlation and attention analysis revealed significant interdependence among environmental parameters and renewable power generation rates. Solar radiation and solar energy production showed a correlation coefficient of 0.84, while wind speed and wind energy production correlated at 0.90. These values quantify the intuitive physical links that govern hybrid plant behavior, and the attention mechanism&#8217;s ability to surface them suggests the architecture does not merely memorize patterns but captures the structure of the underlying system, a property that matters for operator trust and for interpreting why a given interval was flagged.</p>
<p>The work arrives at a moment when grid operators worldwide are wrestling with the integration of variable renewables, and it illustrates both the promise and the discipline required of machine learning in safety-relevant infrastructure. Transformer architectures bring genuine advantages to multivariate time series analysis, including parallel processing of long windows and interpretable attention, and the reported reconstruction improvements over LSTM, GRU, and CNN-LSTM baselines are consistent with that promise. Yet the honest reporting of the recall failure is arguably as valuable as the headline metrics, reminding researchers and operators alike that in anomaly detection the rare event is the entire point, and a detector that misses every fault while achieving 95 percent accuracy is a starting point, not a solution. The study, published open access in Scientific Reports, offers a documented pipeline, real facility data, and a candid evaluation that together map both the progress made and the distance remaining before transformer-based monitoring can be trusted on live solar-wind grids.</p>
<p><strong>Subject of Research:</strong> Transformer-based deep learning for anomaly detection in integrated solar-wind energy systems</p>
<p><strong>Article Title:</strong> Transformer-based architectures for anomaly detection in solar-wind integrated energy infrastructures</p>
<p><strong>Article References:</strong> Asati, R., &amp; Khare, V. (2026). Transformer-based architectures for anomaly detection in solar-wind integrated energy infrastructures. <em>Scientific Reports</em>. <a href="https://doi.org/10.1038/s41598-026-76037-3" rel="noopener noreferrer">https://doi.org/10.1038/s41598-026-76037-3</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1038/s41598-026-76037-3" rel="noopener noreferrer">10.1038/s41598-026-76037-3</a></p>
<p><strong>Keywords:</strong> transformer model, anomaly detection, renewable energy, solar-wind integration, deep learning, attention mechanism, time series, smart grid, fault detection, LSTM, GRU, class imbalance</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">305139</post-id>	</item>
		<item>
		<title>AI Predicts Missed Pediatric Appointments, But Social Barriers Point to Real Fixes</title>
		<link>https://scienmag.com/ai-predicts-missed-pediatric-appointments-but-social-barriers-point-to-real-fixes/</link>
		
		<dc:creator><![CDATA[Harold Sullivan]]></dc:creator>
		<pubDate>Fri, 09 Oct 2026 23:09:02 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[AI pediatric appointment no-show prediction]]></category>
		<category><![CDATA[appointment confirmation]]></category>
		<category><![CDATA[electronic health records]]></category>
		<category><![CDATA[health equity]]></category>
		<category><![CDATA[healthcare data analysis for appointment management]]></category>
		<category><![CDATA[healthcare productivity and cost implications of no-shows]]></category>
		<category><![CDATA[housing instability]]></category>
		<category><![CDATA[identifying actionable social barriers in healthcare]]></category>
		<category><![CDATA[impact of missed appointments on child health outcomes]]></category>
		<category><![CDATA[improving pediatric care continuity through AI]]></category>
		<category><![CDATA[Machine learning]]></category>
		<category><![CDATA[machine learning in pediatric healthcare]]></category>
		<category><![CDATA[no-show prediction]]></category>
		<category><![CDATA[non-medical drivers of health]]></category>
		<category><![CDATA[non-medical factors affecting child healthcare access]]></category>
		<category><![CDATA[patient portal]]></category>
		<category><![CDATA[pediatric health disparities and social influences]]></category>
		<category><![CDATA[pediatrics]]></category>
		<category><![CDATA[predictive analytics in healthcare scheduling]]></category>
		<category><![CDATA[role of social barriers in pediatric appointment adherence]]></category>
		<category><![CDATA[social determinants of health]]></category>
		<category><![CDATA[social determinants of health in pediatric care]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[transportation barriers]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=256370</guid>

					<description><![CDATA[A Houston study of nearly 8,000 pediatric appointments found that while social risk data did not improve AI no-show prediction, unconfirmed appointments, inactive patient portals, transportation needs, and housing instability emerged as modifiable targets for intervention.]]></description>
										<content:encoded><![CDATA[<p>Missed medical appointments are one of the most deceptively simple problems in modern healthcare. A child does not arrive, a clinician sits in an empty room, and a slot that another family could have used quietly evaporates. Multiplied across thousands of visits, these no-shows drain productivity, inflate costs, and, more importantly for pediatric medicine, interrupt the continuity of care that children with chronic conditions and developmental needs depend on. Prior research has linked missed primary care appointments to higher rates of hospitalization, chronic health problems, and even early mortality, making the humble no-show a surprisingly consequential event in a child&#8217;s health trajectory.</p>
<p>A new study published in Pediatric Research by a team at The University of Texas Health Science Center at Houston set out to answer two intertwined questions: can artificial intelligence predict which pediatric appointments will be missed, and does adding information about families&#8217; social circumstances, known as non-medical drivers of health, make those predictions better? The answer to the first question is a qualified yes. The answer to the second is more nuanced, and arguably more interesting: the social data did not sharpen the algorithm&#8217;s accuracy, but it revealed exactly which barriers clinics could act on.</p>
<p>The research team analyzed 7,931 scheduled pediatric appointments across six general pediatrics clinics in the greater Houston metropolitan area between April and August 2024. The clinics included one large academic center within the Texas Medical Center and five community-based sites serving a racially and economically diverse population. The sample was striking: 2,761 appointments, or 34.8 percent, ended in no-shows, a rate far higher than many adult settings and a signal of how much unmet need hides inside pediatric scheduling data. Most appointments in the cohort involved Hispanic (43.2 percent) or non-Hispanic Black (39.2 percent) patients, and nearly 80 percent were covered by Medicaid.</p>
<p>At the heart of the study was a transformer-based machine learning model, an architecture familiar from modern language processing but adapted here for clinical sequences. The model processes each patient&#8217;s visit history with positional information, using encoder layers built around self-attention, feed-forward processing, and normalization steps to learn how past attendance patterns relate to future behavior. Its inputs included prior appointment attendance, phone reminders, confirmation status, appointment details, and even weather. A probability calibration layer then converts the learned visit history representation into an estimated likelihood that a given future appointment will be missed.</p>
<p>The team evaluated the model in four configurations, with and without demographic and insurance variables and with and without non-medical drivers of health data drawn from a 13-item screening questionnaire covering food insecurity, transportation needs, housing instability, financial resource strain, health literacy, and health-harming legal needs. The results were sobering for anyone hoping social data would supercharge prediction. Using baseline variables alone, the model achieved an area under the receiver operating characteristic curve of 0.708, and adding the social variables left that figure unchanged. Adding demographics and insurance nudged performance to an AUROC of 0.721, with the social variables again contributing essentially nothing on top. The area under the precision-recall curve hovered around 0.54 in all configurations, only modestly above the 34.8 percent no-show prevalence.</p>
<p>But the regression analyses told a different and more actionable story. Using generalized estimating equations to account for repeated appointments within the same patients, the researchers found that unconfirmed appointments had more than twice the odds of becoming no-shows compared with confirmed ones, an adjusted odds ratio of 2.24. Appointments tied to inactive or pending patient portal accounts carried 31 percent higher odds of no-show. Transportation needs raised the odds by 54 percent, and housing instability by 26 percent, even after adjusting for demographics, insurance, clinic site, and visit type. Each additional day between scheduling and the visit slightly increased the odds, translating to roughly 10 to 16 percent higher odds for appointments booked 30 days in advance.</p>
<p>Not every association pointed to something a clinic can fix. Non-Hispanic Black patients had 68 percent higher odds of no-show than non-Hispanic White patients, and Medicaid coverage carried 76 percent higher odds than private insurance. Most striking was the category of unknown insurance status, which showed the largest effect size of all, a more than fivefold increase in odds. The authors caution that this label reflects incomplete or unverified insurance information rather than a distinct insurance type, and may be entangled with the very pattern of repeated missed visits it predicts, since insurance is often verified at the visit itself. Still, the magnitude of the association flags these families as being at especially elevated risk.</p>
<p>The findings carry an important ethical warning about how such algorithms should be deployed. If a model flags a family as high-risk and the clinic responds by overbooking that slot or offering a less convenient time, the algorithm could inadvertently punish the very households already struggling with transportation gaps or unstable housing, deepening inequities in access to care. The authors argue that elevated predicted risk is better used as a trigger for supportive outreach and barrier reduction, such as transportation assistance, help with patient portal registration, and care coordination referrals, rather than as an input to scheduling decisions that could ration access. This aligns with broader recommendations for child-centered and ethically implemented medical artificial intelligence.</p>
<p>There are caveats worth keeping in view. The study window spanned only about five months of a single spring-summer period, so seasonal patterns in pediatric attendance, driven by school schedules, holidays, and illness waves, remain untested. Missing data were substantial for some social variables, with transportation needs unknown in 28.2 percent of appointments, which may have blunted both the model contribution and some measured associations. And the study took place within a single health system that already operates an established screening and referral workflow, so results may not generalize to settings without that infrastructure.</p>
<p>Even so, the study&#8217;s central message is refreshingly practical. Prediction alone will not fill empty exam rooms. The strongest predictors of a missed pediatric visit in this cohort, an unconfirmed appointment, an unactivated patient portal, a family that needs a ride or a stable home, are all signals that a clinic can detect and respond to before the visit happens. Artificial intelligence can help find those signals at scale, but the real intervention is human: a phone call that gets a confirmation, a portal sign-up session, a ride arranged, a referral made. In pediatric care, where every missed well-child visit can mean a delayed vaccination or a missed developmental screen, pairing algorithms with outreach may be the difference between predicting no-shows and preventing them.</p>
<p><strong>Subject of Research:</strong> Machine learning prediction of pediatric appointment no-shows incorporating non-medical drivers of health</p>
<p><strong>Article Title:</strong> Non-medical drivers of health and pediatric no-show prediction: identifying modifiable risk factors</p>
<p><strong>Article References:</strong> Gibson, A., Nguyen, L., Yu, L., Kulesza, C., Le, Y.-C., Cavenaugh, S., McKay, S., &amp; Jiang, X. (2026). Non-medical drivers of health and pediatric no-show prediction: identifying modifiable risk factors. <em>Pediatric Research</em>. <a href="https://doi.org/10.1038/s41390-026-05531-1" rel="noopener noreferrer">https://doi.org/10.1038/s41390-026-05531-1</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1038/s41390-026-05531-1" rel="noopener noreferrer">10.1038/s41390-026-05531-1</a></p>
<p><strong>Keywords:</strong> pediatrics, no-show prediction, machine learning, transformer model, non-medical drivers of health, social determinants of health, electronic health records, transportation barriers, housing instability, health equity, patient portal, appointment confirmation</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">256370</post-id>	</item>
		<item>
		<title>AI Turns Cognitive Test Data Into Images to Forecast Multiple Sclerosis Disability</title>
		<link>https://scienmag.com/ai-turns-cognitive-test-data-into-images-to-forecast-multiple-sclerosis-disability/</link>
		
		<dc:creator><![CDATA[Blake Davidson]]></dc:creator>
		<pubDate>Fri, 09 Oct 2026 04:00:09 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[AI-driven health data visualization]]></category>
		<category><![CDATA[Artificial Intelligence]]></category>
		<category><![CDATA[clinical trial enrichment]]></category>
		<category><![CDATA[cognitive assessment]]></category>
		<category><![CDATA[cognitive test data analysis using AI]]></category>
		<category><![CDATA[computerised cognitive testing in MS]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning models for neurological diseases]]></category>
		<category><![CDATA[digital biomarkers]]></category>
		<category><![CDATA[digital health tools for multiple sclerosis management]]></category>
		<category><![CDATA[disability progression]]></category>
		<category><![CDATA[forecasting MS disability progression]]></category>
		<category><![CDATA[international MS research collaborations]]></category>
		<category><![CDATA[longitudinal MS patient outcome prediction]]></category>
		<category><![CDATA[machine learning in neurodegenerative disease prognosis]]></category>
		<category><![CDATA[MSBase registry]]></category>
		<category><![CDATA[Multiple Sclerosis]]></category>
		<category><![CDATA[Multiple sclerosis progression prediction]]></category>
		<category><![CDATA[reaction time]]></category>
		<category><![CDATA[remote cognitive assessments for MS patients]]></category>
		<category><![CDATA[remote monitoring]]></category>
		<category><![CDATA[survival analysis]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[transforming reaction time measurements into images]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=251633</guid>

					<description><![CDATA[Researchers converted serial cognitive reaction time data into images and used a Transformer-based deep survival model to predict disability progression in relapsing-remitting multiple sclerosis.]]></description>
										<content:encoded><![CDATA[<p>Multiple sclerosis is an unpredictable disease, and few of its unpredictabilities matter more to patients than the question of when their disability will begin to accumulate. For people living with the relapsing-remitting form of the condition, periods of neurological stability can lull both patient and clinician into a false sense of security, while the underlying disease process quietly advances. A new study published in PLOS Digital Health suggests that a familiar and low-burden clinical tool, the computerised cognitive test, may hold far more predictive power than anyone realised, provided it is analysed in a radically different way. By transforming thousands of split-second reaction time measurements into images and feeding those images into a deep learning model, an international research team has built a system that can estimate how soon a patient&#8217;s disability will progress.</p>
<p>The research, led by Chao Zhu and Daniel Merlo together with colleagues from institutions across Australia, Europe and beyond, drew on two rich data sources. Clinical information came from MSBase, a large international registry that tracks outcomes in people with multiple sclerosis over many years, while cognitive measurements came from MSReactor, a computerised battery of cognitive tests that patients can complete remotely. The study population consisted of 746 patients with relapsing-remitting multiple sclerosis, whose records spanned the period from February 2016 to September 2022, with a median follow-up of 3.2 years. During that window, the researchers tracked which patients experienced confirmed disability progression, the clinical milestone that marks a turning point in the disease course.</p>
<p>The central challenge the team faced was one of dimensionality. A single session of computerised cognitive testing produces a torrent of reaction time data, with each trial of each task yielding a measurement precise to the millisecond. When those sessions are repeated serially over months and years, the resulting dataset becomes a sprawling, irregularly sampled time series that resists conventional statistical analysis. Traditional approaches collapse this richness into summary statistics, such as the mean reaction time per test, and in doing so discard much of the temporal texture that may carry the earliest signals of neurological change. The researchers suspected that this discarded texture was precisely where the predictive value lay.</p>
<p>Their solution was as elegant as it was unconventional. Rather than treating the reaction time data as numbers to be crunched, they treated it as something to be seen. Serial reaction time measurements from three distinct cognitive tasks were encoded into multicolour images using the RGB colour scheme familiar from digital photography. Psychomotor function, measured by a task labelled R, was mapped to one colour channel; attention, labelled G, to another; and working memory, labelled B, to the third. Each patient&#8217;s cognitive history thus became a visual artefact, a kind of portrait of their brain&#8217;s processing speed over time, in which patterns of variability, slowing and fluctuation could be rendered visible to an algorithm designed to detect them.</p>
<p>Once the images were constructed, the team deployed a convolutional neural network, the same class of algorithm that powers facial recognition and medical image analysis, to extract the salient features from each patient&#8217;s cognitive portrait. These learned features were then combined with standard clinical variables, such as demographic information and disease history, and fed into a Transformer-based survival model the researchers named MS-TranSurv. Survival models are a staple of clinical statistics, designed to predict the time until an event occurs, but the Transformer architecture, originally developed for processing sequential data in natural language, allowed the model to weigh the relative importance of different pieces of information flexibly and in context. The output was a personalised estimate of the time to confirmed disability progression.</p>
<p>Evaluating such a model requires rigorous benchmarks, and the team compared MS-TranSurv against several formidable competitors. These included Dynamic DeepHit and Recurrent Deep Survival Machines, both state-of-the-art deep learning approaches to survival prediction, as well as a classical Cox proportional hazards model built on clinical variables alone, and a stripped-down version of MS-TranSurv that used only mean test values rather than the full image-encoded data. Performance was assessed with three complementary metrics: the concordance index, which measures how well the model ranks patients by risk; the integrated Brier score, which captures calibration, or how closely predicted probabilities match observed outcomes; and the time-dependent area under the receiver operating characteristic curve, which gauges classification accuracy at specific time points.</p>
<p>The results were encouraging, if measured. MS-TranSurv achieved a concordance index of 0.61, with a 95 percent confidence interval of 0.54 to 0.68, indicating slightly better discrimination than the benchmark models. Its time-dependent area under the curve reached 0.74, with a confidence interval of 0.63 to 0.85, while its integrated Brier score of 0.24, spanning 0.16 to 0.32, demonstrated calibration comparable to the alternatives. Notably, the version of the model that consumed individual test-level data, preserving the full granularity of the reaction time recordings, outperformed the variant relying on summary measures. This finding vindicates the team&#8217;s core intuition: the fine-grained temporal structure of cognitive performance carries genuine predictive information that averages destroy.</p>
<p>It is worth being clear about what these numbers do and do not mean. A concordance index of 0.61 reflects modest, not spectacular, discrimination, and the wide confidence intervals reveal the uncertainty inherent in a cohort of this size. The authors are candid that the model&#8217;s advantage over existing approaches is incremental rather than transformative. Yet the significance of the work lies less in the headline metrics than in the demonstration of feasibility. Serial cognitive assessment is inexpensive, non-invasive and can be administered remotely, making it one of the few monitoring tools that patients could realistically deploy from home at high frequency. Proving that this data stream can be converted into survival-based risk predictions opens a door that conventional analysis had kept shut.</p>
<p>The clinical implications extend in several directions. For neurologists managing relapsing-remitting multiple sclerosis, a validated risk prediction tool could sharpen decisions about when to escalate disease-modifying therapy, moving beyond reactive treatment changes after progression becomes evident toward proactive intervention while the window for preventing irreversible damage remains open. For clinical trial designers, the model offers a route to enrichment, the practice of recruiting participants at higher risk of the outcome being studied, which reduces trial size and duration and accelerates the evaluation of new therapies. The framework&#8217;s generality is perhaps its most exciting feature: the image-encoding strategy could be applied to other high-dimensional digital biomarkers, from wearable sensor streams to speech recordings, wherever longitudinal data outstrips the reach of traditional statistics.</p>
<p>The study also underscores a broader shift in neurology toward remote, continuous monitoring. Cognitive decline often precedes measurable physical disability in multiple sclerosis, and subtle changes in processing speed may flag disease activity that standard clinical examinations miss. A patient completing a brief computerised battery at home every few months generates a longitudinal record of brain function that no clinic visit schedule could match. Combined with machine learning methods capable of reading that record in full resolution, such monitoring could transform risk stratification from an art informed by occasional snapshots into a science built on dense, personalised data. The MSBase and MSReactor cohorts that made this study possible hint at the scale of what such data ecosystems could ultimately deliver, and the research team&#8217;s framework offers a template for turning the digital exhaust of routine care into clinically actionable foresight.</p>
<p><strong>Subject of Research:</strong> Deep learning prediction of disability progression in relapsing-remitting multiple sclerosis using image-encoded cognitive reaction time data</p>
<p><strong>Article Title:</strong> Strategies for integrating artificial intelligence and cognitive assessment to predict disability progression in relapsing-remitting multiple sclerosis: A model development study</p>
<p><strong>Article References:</strong> Zhu, C., Zhang, X., van der Walt, A., Taylor, B., Monif, M., Kalincik, T., Lechner-Scott, J., Buzzard, K., Kilpatrick, T., Barnett, M., Zhou, Z., Jokubaitis, V., Gresle, M., Darby, D., Mehta, D., Ge, Z., Butzkueven, H., &amp; Merlo, D. (2026). Strategies for integrating artificial intelligence and cognitive assessment to predict disability progression in relapsing-remitting multiple sclerosis: A model development study. <em>PLOS Digital Health, 5</em>(9), e0001722. <a href="https://doi.org/10.1371/journal.pdig.0001722" rel="noopener noreferrer">https://doi.org/10.1371/journal.pdig.0001722</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1371/journal.pdig.0001722" rel="noopener noreferrer">10.1371/journal.pdig.0001722</a></p>
<p><strong>Keywords:</strong> multiple sclerosis, artificial intelligence, deep learning, cognitive assessment, disability progression, survival analysis, digital biomarkers, reaction time, Transformer model, remote monitoring, clinical trial enrichment, MSBase registry</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">251633</post-id>	</item>
		<item>
		<title>Noise-Proof AI Translation Brings Low-Resource Languages Into the Digital Age</title>
		<link>https://scienmag.com/noise-proof-ai-translation-brings-low-resource-languages-into-the-digital-age/</link>
		
		<dc:creator><![CDATA[Denise Maddox]]></dc:creator>
		<pubDate>Fri, 02 Oct 2026 17:08:14 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[adversarial training]]></category>
		<category><![CDATA[AI translation resilience to messy input]]></category>
		<category><![CDATA[back-translation]]></category>
		<category><![CDATA[BLEU score]]></category>
		<category><![CDATA[cognitive information processing]]></category>
		<category><![CDATA[cognitive-inspired language processing]]></category>
		<category><![CDATA[data augmentation]]></category>
		<category><![CDATA[enhancing multilingual communication through robust AI]]></category>
		<category><![CDATA[functional equivalence]]></category>
		<category><![CDATA[handling typos and dialectal variation in translation]]></category>
		<category><![CDATA[improving translation accuracy with limited data]]></category>
		<category><![CDATA[Low-resource language machine translation]]></category>
		<category><![CDATA[low-resource languages]]></category>
		<category><![CDATA[machine translation]]></category>
		<category><![CDATA[natural language processing]]></category>
		<category><![CDATA[neural computing for low-resource languages]]></category>
		<category><![CDATA[neural network robustness in translation models]]></category>
		<category><![CDATA[noise injection]]></category>
		<category><![CDATA[noise-proof neural translation frameworks]]></category>
		<category><![CDATA[noise-resistant AI translation systems]]></category>
		<category><![CDATA[scalable translation models for endangered languages]]></category>
		<category><![CDATA[scarce data language translation solutions]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[translation studies]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=228711</guid>

					<description><![CDATA[Researchers have built an anti-interference machine translation model that combines translation-training corpora, adversarial noise injection, and functional equivalence constraints to boost robustness for low-resource languages.]]></description>
										<content:encoded><![CDATA[<p>Machine translation has transformed how hundreds of millions of people read, work, and communicate across language barriers, but the revolution has quietly left most of the world&#8217;s languages behind. The neural systems that power fluent translation between English and Chinese, or Spanish and French, depend on enormous collections of parallel texts, sentence-by-sentence translations curated over decades. For the thousands of languages spoken by smaller communities, such resources simply do not exist, and the models trained on the scraps that are available tend to be fragile, collapsing when confronted with the typos, dialectal variation, and messy input that characterize real-world text. A new study published in Neural Computing and Applications by Yanjun Zhou of Guilin University of Electronic Technology and Shuling Zhou of No. 6 High School in Lengshuijiang, China, proposes a way to harden these models against interference, even when training data is desperately scarce.</p>
<p>The researchers frame the problem within the framework of cognitive-based information processing and applications, an approach that treats translation not as a purely statistical exercise but as a process that should mimic how human translators cope with ambiguity and noise. Their central insight is that robustness cannot be bolted onto a model after the fact; it must be built into training from the ground up. To do this, the team systematically integrated three ingredients: translation training data resources, a dynamic noise injection mechanism, and theoretical constraints drawn from functional equivalence, a concept borrowed from translation studies that judges a translation by whether it produces the same effect on its reader as the original text does on its own audience.</p>
<p>The first ingredient is unusually creative. Rather than scraping the internet for whatever parallel text exists, the authors harvested corpora generated during translation training itself, the pedagogical process by which student translators learn their craft. These corpora include complete text pairs consisting of student translations alongside professional reference translations. The pairing is valuable in a subtle way: student translations naturally contain errors, awkward phrasings, and deviations from the professional standard, so each pair captures not only what a correct translation looks like but also what plausible mistakes look like. That structure gives a machine learning system a rich signal about the boundaries between acceptable variation and genuine distortion of meaning, precisely the boundary a robust model must learn to respect.</p>
<p>On top of this foundation, the researchers applied back-translation, a well-established data augmentation technique in which a model translates target-language text back into the source language to synthesize new parallel pairs. Back-translation has long been a lifeline for low-resource machine translation because it multiplies limited data without requiring new human annotation. But synthetic data alone does not prepare a model for hostile conditions. The team therefore expanded the augmented training set by deliberately injecting noise, corrupting sentences in controlled ways so the model would encounter degraded input during training rather than only in deployment. The strategy echoes a broader trend in natural language processing, where data augmentation for limited-data learning has become one of the most reliable tools for squeezing performance out of small datasets.</p>
<p>The most technically distinctive component is the combination of adversarial training with a dynamically adjusted noise injection ratio governed by cognitively inspired attention weighting. In adversarial training, the model is trained against deliberately challenging examples, an arms race in which the system learns to resist perturbations that would otherwise derail it. Here, the adversary is a noise generator whose intensity is not fixed in advance but modulated as training proceeds, with attention mechanisms determining where interference should be concentrated to simulate realistic interference scenarios. The cognitive framing matters: human readers do not experience noise uniformly across a sentence, and their attention gravitates toward content-bearing words that carry the core meaning. By weighting noise injection in a way that reflects this cognitive reality, the training regime produces a model that fails, when it fails, in more human-like and less catastrophic ways.</p>
<p>The final piece of the architecture constrains the decoder, the component of a Transformer model that generates the output translation, using functional equivalence theory. Instead of allowing the decoder to optimize purely for surface-level likelihood, the constraint pushes it toward outputs that preserve the semantic function of the source text. This is a notable example of importing a humanistic concept from translation studies into the mathematical machinery of deep learning. Functional equivalence, developed in the tradition of dynamic equivalence in Bible translation and elaborated by generations of translation theorists, asks whether a translated text accomplishes the same communicative purpose as the original. Encoding that requirement as an optimization constraint gives the model a semantic anchor that survives even when the input is heavily corrupted.</p>
<p>The experimental results suggest the approach delivers substantial gains where they are needed most. At a noise level of 20 percent, a level of corruption that would seriously degrade a conventional model, the performance improvement for languages with high morphological complexity was approximately 26.0 percent. Morphologically complex languages, in which a single word can encode grammatical information that English spreads across several words, are particularly vulnerable to noise because a single corrupted character can destroy grammatical features the model depends on. The fact that the largest gains appear in exactly this group indicates the method is addressing a structural weakness of standard architectures rather than delivering a marginal, across-the-board bump.</p>
<p>Even more striking are the results under extreme data scarcity. With only 5,000 sentence pairs available for training, a volume that would be considered laughably small for conventional neural machine translation, the proposed model achieved a BLEU score of 16.3 in the high morphological complexity language group. BLEU, the Bilingual Evaluation Understudy, is the standard automated metric for translation quality, and every point represents a meaningful improvement in how closely machine output matches human reference translations. The 16.3 score was 3.7 points higher than a standard Transformer model trained on the same tiny dataset. For context, the Transformer architecture introduced in 2017 remains the backbone of virtually all modern machine translation, so beating it by nearly four BLEU points in a low-resource regime is a significant result for the field.</p>
<p>The study arrives amid growing concern about what researchers have called digital sidelining, the phenomenon by which speakers of low-resource languages are effectively excluded from the benefits of modern language technology. Recent surveys of neural machine translation for low-resource languages, including comprehensive reviews in the ACM Computing Surveys and analyses from Chinese-centric and multilingual perspectives, have documented how the gap between well-resourced and under-resourced languages widens as models scale. Language modeling bias has even been argued to produce forms of epistemic injustice, since communities whose languages are poorly represented by algorithms face systematic disadvantages in accessing information. Techniques like the one developed by the Zhou team offer a practical countermeasure, extracting maximum value from data that already exists rather than waiting for expensive annotation campaigns that may never come.</p>
<p>The work also carries implications beyond translation itself. The combination of adversarial noise injection, cognitively motivated attention weighting, and theory-driven output constraints could inform other natural language processing tasks in low-resource settings, from speech recognition for dialects, where noise robustness has been a persistent challenge, to sentiment analysis, cross-lingual summarization, and text classification across languages. The research was conducted as part of a project on the translation of intangible cultural heritage in Guangxi, a region of China home to numerous minority languages and traditions, underscoring the practical stakes: when a language lacks robust machine translation, its literature, oral history, and cultural documentation remain locked away from the wider digital world. By demonstrating that a carefully engineered training regime can make small-data translation models dramatically more resilient, the study offers a template for bringing the next few thousand languages, and the people who speak them, into the conversation.</p>
<p><strong>Subject of Research:</strong> Anti-interference neural machine translation for low-resource languages using translation training data, noise injection, and functional equivalence constraints</p>
<p><strong>Article Title:</strong> Construction of anti-interference translation model for low-resource languages based on translation training</p>
<p><strong>Article References:</strong> Zhou, Y., &amp; Zhou, S. (2026). Construction of anti-interference translation model for low-resource languages based on translation training. <em>Neural Computing and Applications, 38</em>(17), Article 738. <a href="https://doi.org/10.1007/s00521-026-12361-z" rel="noopener noreferrer">https://doi.org/10.1007/s00521-026-12361-z</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s00521-026-12361-z" rel="noopener noreferrer">10.1007/s00521-026-12361-z</a></p>
<p><strong>Keywords:</strong> machine translation, low-resource languages, Transformer model, adversarial training, back-translation, data augmentation, functional equivalence, noise injection, BLEU score, natural language processing, cognitive information processing, translation studies</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">228711</post-id>	</item>
		<item>
		<title>AI Designs Working T-Cell Receptors That Could Transform Immunotherapy Screening</title>
		<link>https://scienmag.com/ai-designs-working-t-cell-receptors-that-could-transform-immunotherapy-screening/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Fri, 02 Oct 2026 07:34:58 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[AI-designed T-cell receptors]]></category>
		<category><![CDATA[artificial immune system sensors]]></category>
		<category><![CDATA[CDR3]]></category>
		<category><![CDATA[computer-aided drug discovery]]></category>
		<category><![CDATA[epitope]]></category>
		<category><![CDATA[ERTransformer for TCR sequence generation]]></category>
		<category><![CDATA[flow cytometry]]></category>
		<category><![CDATA[generative AI]]></category>
		<category><![CDATA[generative models for receptor design]]></category>
		<category><![CDATA[Genome Biology]]></category>
		<category><![CDATA[Immunotherapy]]></category>
		<category><![CDATA[immunotherapy optimization]]></category>
		<category><![CDATA[immunotherapy screening advancements]]></category>
		<category><![CDATA[machine learning in immunology]]></category>
		<category><![CDATA[peptide-HLA]]></category>
		<category><![CDATA[personalized T-cell therapies]]></category>
		<category><![CDATA[pre-trained language model]]></category>
		<category><![CDATA[protein design]]></category>
		<category><![CDATA[protein shape prediction to receptor design]]></category>
		<category><![CDATA[synthetic T-cell receptor development]]></category>
		<category><![CDATA[T cell activation]]></category>
		<category><![CDATA[T cell receptor]]></category>
		<category><![CDATA[T cell receptor activation]]></category>
		<category><![CDATA[Transformer model]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=226442</guid>

					<description><![CDATA[Researchers have developed a transformer-based AI model that generates functional T-cell receptor sequences tailored to specific epitopes, with laboratory tests showing some artificial receptors activate T cells as strongly as natural ones.]]></description>
										<content:encoded><![CDATA[<p>Artificial intelligence has now moved from predicting the shapes of proteins to designing the molecular sensors of the human immune system. In a study published in Genome Biology, a team of researchers from Tencent&#8217;s AI for Life Sciences Lab, City University of Hong Kong, The University of Hong Kong, Xijing Hospital of Digestive Diseases, Harvard Medical School, Monash University, and collaborators unveiled a generative model called the Epitope-Receptor-Transformer, or ERTransformer. The system generates candidate T-cell receptor sequences tailored to recognize specific molecular targets, and remarkably, laboratory tests showed that some of these artificial receptors can activate T cells as strongly as, or even more strongly than, the receptors that nature itself produced. The work, led by Jiannan Yang, Bing He, Lei Guan, Shouzhi Chen, and Yu Zhao as co-first authors, with corresponding authors including Jianhua Yao, Qingpeng Zhang, and Ting Li, points toward a future in which the search for therapeutic T-cell receptors begins on a computer rather than at the laboratory bench.</p>
<p>To understand why this matters, it helps to consider how T cells work. Each T cell in the body carries a receptor, known as a T-cell receptor or TCR, that recognizes fragments of foreign or abnormal proteins displayed on the surface of other cells. These fragments, called epitopes, are presented by human leukocyte antigen molecules, or HLAs, forming a peptide-HLA complex that the TCR must read with exquisite specificity. The portion of the receptor that does most of this reading is a loop called the CDR3 region on the beta chain of the receptor. Because the DNA sequences encoding CDR3 loops are assembled randomly during T-cell development, the human body can theoretically produce an astronomically large repertoire of receptors, allowing it to recognize nearly any pathogen or tumor marker it might encounter.</p>
<p>The problem for immunotherapy developers is that finding the right receptor for a given target is extraordinarily difficult. When a patient&#8217;s tumor displays a particular peptide on its HLA molecules, researchers want to identify or engineer TCRs that will bind that peptide-HLA complex specifically, so that engineered T cells can home in on the cancer. Today, that process depends heavily on laborious and expensive experimental screening: collecting T cells that happen to respond to the target, sequencing their receptors, cloning candidates, and testing them one by one. The sheer scale of possible CDR3 sequences means that even large screens sample only a vanishingly small corner of the search space, and promising receptors may be missed entirely. This bottleneck is precisely what the ERTransformer was designed to relieve.</p>
<p>The architecture of the new model rests on two pre-trained transformer networks, the same class of deep learning architecture that underlies modern large language models. The first component, EpitopeBERT, was trained on approximately 1.9 million epitope sequences, allowing it to internalize the statistical grammar of the peptide fragments that the immune system encounters. The second, ReceptorBERT, was trained on roughly 33.1 million TCR sequences, giving it a deep understanding of the structural and compositional constraints that govern which receptor loops are biologically plausible. By combining these two pre-trained encoders, ERTransformer can be conditioned on a specific epitope and then generate candidate beta-chain CDR3 sequences that are plausible as receptors while being directed toward that particular target, much as a language model conditioned on a topic generates relevant text.</p>
<p>Conditioning is the crucial trick. A generative model trained only on receptor sequences could produce endless plausible-looking CDR3 loops, but with no guarantee that any of them would recognize the intended target. By feeding epitope information into the generation process, the researchers steered the model so that its outputs were biased toward receptors relevant to a defined peptide-HLA context. This epitope-conditioned generation transforms the model from a random sequence generator into a targeted design tool, capable of expanding and prioritizing candidate receptors for downstream experimental screening in defined peptide-HLA and TCR-chain contexts, as the authors describe in their conclusions.</p>
<p>To demonstrate the capability, the team put the model through a concrete test. They selected five epitopes for which natural TCRs are already known, and asked ERTransformer to generate 1,000 candidate beta-chain CDR3 sequences for each one. The resulting pool of 5,000 artificial sequences was then analyzed for how well it satisfied the statistical expectations of real receptor biology. The generated candidates showed low sequence similarity to natural TCR beta chains, meaning the model was not simply memorizing and copying receptors from its training data, while at the same time retaining plausible CDR3 lengths, realistic amino-acid composition, and the conservative substitution patterns characteristic of genuine receptor loops. In other words, the artificial sequences looked novel but not alien, a balance that is notoriously hard to strike in generative protein design.</p>
<p>Novelty alone, however, proves nothing in immunology. A receptor sequence that looks plausible on paper may fail to fold, fail to bind, or bind the wrong things entirely. That is why the most striking part of the study is its wet-laboratory validation. The researchers selected a subset of the artificial TCRs and tested them experimentally using flow cytometry in defined TCR and peptide-HLA contexts, measuring the degree of T-cell activation each engineered receptor produced. The results exceeded what many in the field might have expected: the level of T-cell activation induced by the selected artificial receptors was either comparable to or even surpassed that of the natural receptors specific for the same epitopes. Synthetic sequences, dreamed up by a transformer model and never evolved in any organism&#8217;s thymus, could genuinely do the job.</p>
<p>The implications of that finding ripple across several areas of medicine. TCR-based immunotherapies, in which a patient&#8217;s T cells are engineered to express a receptor targeting a tumor-associated peptide, represent one of the most promising frontiers in cancer treatment. But their development has been constrained by the difficulty of sourcing high-affinity, specific receptors, particularly for targets where natural T cells respond weakly or not at all. A generative model that can propose thousands of candidate receptors for a defined target, each statistically vetted for plausibility, could dramatically expand the starting pool for screening and increase the odds of finding a receptor with the right combination of potency and specificity. The authors position ERTransformer explicitly as a tool to expand and prioritize candidates for downstream experimental screening, not as a replacement for experimentation, but as a way to make that experimentation far more efficient.</p>
<p>The study also illustrates a broader trend in computational biology: the power of pre-training on massive unlabeled datasets before fine-tuning on specific tasks. Just as language models learn general grammar from billions of sentences before being adapted to translation or summarization, EpitopeBERT and ReceptorBERT learned the general statistics of epitopes and receptors from millions of sequences before being combined for epitope-conditioned generation. The supplementary analyses accompanying the paper, including leakage-controlled evaluations, length distribution comparisons, and diversity and novelty analyses, suggest the team took seriously the methodological pitfalls that can make generative models appear better than they are, such as accidentally training on sequences that also appear in the test set.</p>
<p>Published as open access on 2 September 2026 in Genome Biology, with the work supported in part by the National Natural Science Foundation of China, the study arrives at a moment when generative artificial intelligence is reshaping protein science at large. From protein structure prediction to de novo enzyme design, machine learning models are increasingly proposing molecules that experimenters then confirm in the lab. The ERTransformer extends that paradigm to the adaptive immune system, one of the most complex and personalized molecular landscapes in biology. If the approach generalizes beyond the five epitopes tested here, the painstaking hunt for therapeutic T-cell receptors could become a collaboration between vast pre-trained models and targeted experiments, with algorithms proposing and laboratories verifying. For patients waiting on the next generation of engineered T-cell therapies, that collaboration could mean the difference between candidates found by chance and candidates found by design.</p>
<p><strong>Subject of Research:</strong> Epitope-conditioned generative AI for designing T-cell receptor beta-chain CDR3 sequences for immunotherapy</p>
<p><strong>Article Title:</strong> Epitope-conditioned generation of T-cell receptor β-chain CDR3 candidates using a pre-trained transformer model</p>
<p><strong>Article References:</strong> Yang, J., He, B., Guan, L., Chen, S., Zhao, Y., Jiang, F., Wang, Z., Guo, Y., Xu, Z., Yuan, B., Song, J., Zhang, Q., Li, T., &amp; Yao, J. (2026). Epitope-conditioned generation of T-cell receptor β-chain CDR3 candidates using a pre-trained transformer model. <em>Genome Biology</em>. <a href="https://doi.org/10.1186/s13059-026-04266-w" rel="noopener noreferrer">https://doi.org/10.1186/s13059-026-04266-w</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s13059-026-04266-w" rel="noopener noreferrer">10.1186/s13059-026-04266-w</a></p>
<p><strong>Keywords:</strong> T-cell receptor, CDR3, epitope, transformer model, generative AI, immunotherapy, peptide-HLA, protein design, flow cytometry, pre-trained language model, Genome Biology, T-cell activation</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">226442</post-id>	</item>
		<item>
		<title>AI Knockout Screen Reveals GSTP1 as a Driver of Lung Cancer Immunotherapy Resistance</title>
		<link>https://scienmag.com/ai-knockout-screen-reveals-gstp1-as-a-driver-of-lung-cancer-immunotherapy-resistance/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Wed, 30 Sep 2026 22:26:58 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[AI-driven gene analysis in cancer]]></category>
		<category><![CDATA[anti-PD-1]]></category>
		<category><![CDATA[biological targets for lung cancer treatment]]></category>
		<category><![CDATA[biomarker]]></category>
		<category><![CDATA[biomarkers for immunotherapy response]]></category>
		<category><![CDATA[computational methods for cancer research]]></category>
		<category><![CDATA[ferroptosis]]></category>
		<category><![CDATA[gene deletion simulation in tumor cells]]></category>
		<category><![CDATA[Geneformer]]></category>
		<category><![CDATA[GSTP1]]></category>
		<category><![CDATA[GSTP1 gene in lung cancer]]></category>
		<category><![CDATA[immunotherapy efficacy prediction]]></category>
		<category><![CDATA[Immunotherapy Resistance]]></category>
		<category><![CDATA[in-silico knockout]]></category>
		<category><![CDATA[Journal of Translational Medicine]]></category>
		<category><![CDATA[lung cancer immunotherapy resistance]]></category>
		<category><![CDATA[non-small cell lung cancer]]></category>
		<category><![CDATA[personalized immunotherapy strategies]]></category>
		<category><![CDATA[role of glutathione S-transferase Pi 1 in cancer]]></category>
		<category><![CDATA[Single-Cell RNA Sequencing]]></category>
		<category><![CDATA[single-cell RNA sequencing in lung cancer]]></category>
		<category><![CDATA[transformer AI models in oncology]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[tumor microenvironment]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=219742</guid>

					<description><![CDATA[A transformer-based in-silico gene knockout screen across 109 cell types has identified GSTP1 as a key driver of immunotherapy resistance in non-small cell lung cancer, and combining GSTP1 targeting with anti-PD-1 therapy significantly inhibited tumor growth in preclinical models.]]></description>
										<content:encoded><![CDATA[<p>Immunotherapy has transformed the treatment of non-small cell lung cancer, turning a once uniformly fatal diagnosis into a disease that many patients can live with for years. Yet the hard truth remains that a large fraction of patients derive little or no benefit from checkpoint inhibitors, and clinicians have had no reliable way to predict who will respond before committing to therapy. A new study published in the Journal of Translational Medicine by researchers at Sun Yat-Sen University Cancer Center and collaborating institutions in China now offers both a computational roadmap and a concrete biological target. Using a transformer-based artificial intelligence model to simulate the deletion of individual genes across an unprecedented atlas of 109 distinct cell types, the team identified 110 genes tied to immunotherapy efficacy and pinpointed one enzyme, glutathione S-transferase Pi 1, or GSTP1, as a leading culprit behind treatment failure in lung cancer.</p>
<p>The study&#8217;s methodological core is as notable as its biological findings. The researchers began with single-cell RNA sequencing datasets from patients with non-small cell lung cancer who had undergone immunotherapy, drawing on three publicly available cohorts catalogued in the Gene Expression Omnibus under the accession numbers GSE207422, GSE179994, and GSE176021. After careful annotation against a large-scale pancancer atlas and established hallmarks of cancer biology, they resolved the tumor microenvironment into 109 distinct cell types, a granularity that captures not only malignant cells but also the intricate cast of immune and stromal players that surround them, from conventional dendritic cells and tumor-infiltrating myeloid cells to cancer-associated fibroblasts.</p>
<p>What sets the work apart is how the team interrogated this cellular landscape. Rather than relying solely on conventional differential-expression analysis, which can only report correlations, they deployed Geneformer, a transformer-based foundation model trained on large corpora of single-cell transcriptomic data. Geneformer allows what the authors call in-silico single-gene knockouts: the computational deletion of a gene across every cell type in the dataset, followed by prediction of how that deletion reshapes the cell&#8217;s transcriptional state. By systematically performing these virtual perturbations across all 109 cell types, the researchers could estimate each gene&#8217;s functional influence on immunotherapy outcome, a task that would be experimentally prohibitive if attempted gene by gene in the laboratory.</p>
<p>This virtual screen converged with more traditional approaches to yield a ranked list of 110 genes associated with immunotherapy efficacy. Of these, 25 were linked to better treatment outcomes, while 85 were associated with worse outcomes, a skew that reflects the biological reality that many tumor programs actively suppress immune attack. Crucially, the analysis did not treat the tumor as a uniform mass. The team mapped precisely which cell types each gene acted in, revealing that the same gene can exert opposing or complementary effects depending on whether it is expressed in malignant cells, cytotoxic lymphocytes, or stromal compartments. Hierarchical clustering then organized these genes into functional modules, and variance-partitioning statistics quantified how much of the variation in immunotherapy response between patients each gene could explain.</p>
<p>To translate this catalog into something clinically usable, the researchers built an immune scoring system based on all 110 genes, and then distilled it into a leaner model called CancerCellScore, built on just seven genes. GSTP1 emerged as the top contributor among those seven. The scoring system was verified to distinguish patients who respond to immunotherapy from those who do not, offering a potential decision-support tool for oncologists weighing whether checkpoint blockade is the right first move. To make the tool accessible, the team deployed a website at immunotherapy.live/ResisGenes, where the 110 genes can be visualized and real-time sample scores can be computed, an unusual degree of transparency and practicality for a discovery-stage biomarker study.</p>
<p>The mechanistic story that follows is where the study acquires its therapeutic punch. GSTP1 encodes glutathione S-transferase Pi 1, a detoxification enzyme best known for conjugating electrophilic compounds to glutathione and thereby shielding cells from oxidative damage. The researchers found that GSTP1 expression was negatively associated with immunotherapy response: the more of it a tumor expressed, the less likely the patient was to benefit from anti-PD-1 therapy. This connection is not arbitrary. GSTP1 sits squarely within the antioxidant machinery that determines whether a cancer cell succumbs to ferroptosis, an iron-dependent form of regulated cell death driven by the accumulation of lipid peroxides, a process in which the lipid peroxidation marker 4-hydroxynonenal serves as a classic readout.</p>
<p>By keeping glutathione levels high and lipid peroxidation in check, GSTP1 effectively buffers tumor cells against the oxidative stress that ferroptosis-inducing immune pressure generates. The team validated this logic in the laboratory using RNA interference approaches, including short hairpin RNAs and small interfering RNAs, and confirmed the regulatory circuitry with chromatin immunoprecipitation and quantitative polymerase chain reaction, tracing GSTP1&#8217;s activity to antioxidant response elements in its regulatory regions. The most striking result, however, came from in vivo experiments: when anti-GSTP1 strategies were combined with anti-PD-1 therapy, tumor growth was significantly inhibited compared with either approach alone. In other words, disarming GSTP1 appeared to re-sensitize tumors to checkpoint blockade, plausibly by lowering the ferroptosis threshold and allowing the immune-stimulated oxidative assault to push cancer cells over the edge into death.</p>
<p>The implications for patients with non-small cell lung cancer are twofold. First, the seven-gene CancerCellScore model, with GSTP1 at its head, could serve as a predictive biomarker, identifying before treatment begins which patients are likely to resist PD-1 inhibitors and might instead be candidates for combination regimens or clinical trials. Second, GSTP1 itself becomes a druggable target. Glutathione S-transferases have long interested pharmacologists because of their role in chemotherapy detoxification, and the present study reframes that pharmacology in the immunotherapy era: inhibiting GSTP1 is not merely a way to make tumors more chemosensitive, but a way to make them more visible and vulnerable to the immune system. The study also received ethical approval from the Sun Yat-sen University Cancer Center Animal Care and Use Committee, underscoring that the in vivo findings rested on formally reviewed animal work.</p>
<p>There are, of course, the usual caveats that separate a compelling translational study from bedside practice. The scoring system was developed and verified in retrospective cohorts, and prospective validation in independent patient populations will be needed before it can guide treatment decisions. The combination of GSTP1 targeting with anti-PD-1 therapy, while dramatically effective in preclinical models, must clear the familiar hurdles of pharmacology, safety, and tumor delivery before human trials can be designed with confidence. The authors themselves frame the work as a discovery and prioritization engine rather than a finished therapeutic protocol, and the open-access release of the model, the gene list, and the live scoring website invites the wider community to stress-test the findings against their own datasets.</p>
<p>Even with those caveats, the study stands as a vivid demonstration of how large language models adapted to biology are changing the pace and scale of target discovery. A transformer trained on single-cell data can, in silico, delete thousands of genes across more than a hundred cell types and rank their contributions to a clinical outcome, compressing years of bench work into a computational pass that then directs focused experiments. The result here is a complete arc, from machine-learning perturbation screens through multi-omic prioritization to mechanistic validation and a candidate combination therapy, all centered on a single enzyme that lung tumors use to shield themselves from both oxidative death and immune destruction. If GSTP1 inhibition fulfills its promise in the clinic, the path that led there, virtual knockouts across 109 cell types converging on ferroptosis as the Achilles heel of immunotherapy resistance, may prove as influential as the target itself.</p>
<p><strong>Subject of Research:</strong> GSTP1-mediated resistance to anti-PD-1 immunotherapy in non-small cell lung cancer identified by transformer-based single-cell perturbation modeling</p>
<p><strong>Article Title:</strong> GSTP1 is associated with NSCLC immunotherapy resistance: multi-omic discovery via transformer-based perturbation across 109 cell types</p>
<p><strong>Article References:</strong> Liu, H., Xu, Y., Zhan, J., Luo, L., Hong, S., &amp; Huang, Y. (2026). GSTP1 is associated with NSCLC immunotherapy resistance: multi-omic discovery via transformer-based perturbation across 109 cell types. <em>Journal of Translational Medicine</em>. <a href="https://doi.org/10.1186/s12967-026-08949-7" rel="noopener noreferrer">https://doi.org/10.1186/s12967-026-08949-7</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12967-026-08949-7" rel="noopener noreferrer">10.1186/s12967-026-08949-7</a></p>
<p><strong>Keywords:</strong> non-small cell lung cancer, immunotherapy resistance, GSTP1, single-cell RNA sequencing, Geneformer, in-silico knockout, anti-PD-1, ferroptosis, biomarker, tumor microenvironment, transformer model, Journal of Translational Medicine</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">219742</post-id>	</item>
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		<title>Dual-Comb Fiber Imaging With Deep Learning Hits Video-Rate Single-Pixel Views</title>
		<link>https://scienmag.com/dual-comb-fiber-imaging-with-deep-learning-hits-video-rate-single-pixel-views/</link>
		
		<dc:creator><![CDATA[Blake Davidson]]></dc:creator>
		<pubDate>Wed, 30 Sep 2026 19:51:44 +0000</pubDate>
				<category><![CDATA[Chemistry]]></category>
		<category><![CDATA[biomedical optics]]></category>
		<category><![CDATA[computational imaging]]></category>
		<category><![CDATA[deep brain imaging technologies]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning for medical imaging]]></category>
		<category><![CDATA[dual-comb fiber imaging]]></category>
		<category><![CDATA[dual-comb interferometry]]></category>
		<category><![CDATA[endomicroscopy]]></category>
		<category><![CDATA[fiber optic imaging systems]]></category>
		<category><![CDATA[ghost imaging]]></category>
		<category><![CDATA[high-speed dynamic tissue imaging]]></category>
		<category><![CDATA[hyperspectral imaging]]></category>
		<category><![CDATA[minimally invasive imaging]]></category>
		<category><![CDATA[minimally invasive optical probes]]></category>
		<category><![CDATA[optical frequency combs]]></category>
		<category><![CDATA[optical frequency combs in biomedical applications]]></category>
		<category><![CDATA[real-time medical imaging with deep learning]]></category>
		<category><![CDATA[single-pixel endomicroscopy]]></category>
		<category><![CDATA[single-pixel imaging]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[transformer-based neural networks in healthcare]]></category>
		<category><![CDATA[ultra-miniature endoscopic imaging devices]]></category>
		<category><![CDATA[video-rate cellular visualization]]></category>
		<category><![CDATA[wavelength-division multiplexing]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=218658</guid>

					<description><![CDATA[Researchers have combined dual optical frequency combs with a Transformer-based deep learning model to achieve video-rate single-pixel imaging through a single-core fiber for minimally invasive endomicroscopy.]]></description>
										<content:encoded><![CDATA[<p>Minimally invasive imaging has long faced an uncomfortable trade-off: the deeper a physician needs to look inside the body, the smaller the optical probe must be, and the smaller the probe, the harder it becomes to capture sharp, fast images. A collaborative team from NTT Research, the University of California Irvine, and Los Alamos National Laboratory now reports a way out of this bind. In a paper published in Light: Science &amp; Applications, the researchers demonstrate a fiber-based imaging system that pairs dual optical frequency combs with a Transformer-based deep learning model, achieving two-dimensional imaging of dynamic targets at beyond-video frame rates using nothing more than a single-core optical fiber and a single-pixel photodetector at the front end.</p>
<p>The clinical motivation is straightforward. Endomicroscopy, which allows in vivo, cellular-level visualization of tissue without a physical biopsy, provides critical pathophysiological information for diagnosing gastrointestinal, pulmonary, and neurological abnormalities. Yet conventional high-resolution endoscopes depend on bulky pixelated detector arrays such as CMOS or CCD sensors, and those arrays cannot be miniaturized down to the hundred-micron scale required to reach highly constrained anatomical regions, including the deep brain, without sacrificing resolution. The result is that some of the most medically valuable imaging sites remain effectively off-limits to high-fidelity, real-time optical imaging.</p>
<p>Optical-fiber-based ghost imaging, also known as single-pixel imaging, has long been considered theoretically ideal for these photon-starved, size-constrained environments. Instead of a camera with millions of pixels, the approach projects a sequence of known light patterns onto a scene and records only the total reflected or transmitted intensity with a single detector. Correlating the known patterns with the measured intensities reconstructs an image computationally. In principle, the optical front end can be as simple as one fiber and one detector, which is exactly what a minimally invasive probe demands.</p>
<p>In practice, however, ghost imaging has been held back by several stubborn technical challenges, chief among them a fundamental speed bottleneck. Conventional implementations require slow, sequential pattern projection, either through spatial light modulators that display one pattern at a time or through wavelength sweeps that step through illumination colors sequentially. That serial approach caps the achievable frame rate and introduces severe motion artifacts whenever the target moves, which is precisely the situation in living tissue. Classical reconstruction algorithms add a second problem: substantial computational latency that makes real-time, video-rate image reconstruction impractical for clinical use.</p>
<p>The new system resolves both bottlenecks through a hardware-software co-design. On the hardware side, the researchers leveraged highly stabilized dual optical frequency combs, devices that generate spectra composed of many precisely spaced, phase-coherent lines. Each individual comb line is mapped to a mutually uncorrelated speckle pattern, meaning that many distinct illumination patterns are effectively generated and detected in parallel rather than one after another. Wavelength-division multiplexing, the same technology that carries many data channels through a single optical communications fiber, combines with dual-comb interferometry and ghost imaging to create a minimally invasive optical front end.</p>
<p>The detection step is equally elegant in its compression. After the comb light interacts with the target, the system optically measures the bucket sum of each comb-line power, essentially a hyperspectral multiply-accumulate, or MAC, operation performed in parallel across the spectral channels. In a single photodetection step, the hypercube of data containing two-dimensional spatial information is physically compressed into a one-dimensional analog temporal electrical voltage signal. All of the spatial detail survives only implicitly, encoded in how each speckle pattern weighted the light that reached the detector.</p>
<p>Recovering an image from such a highly compressed snapshot is fundamentally an inverse optimization problem, and this is where the software half of the co-design takes over. The team developed an application-specific deep-learning Transformer model that learns the complex correlations between the known speckle patterns and the corresponding bucket intensities of the target-encoded light. Once trained, the model reconstructs high-fidelity target images from the compressed measurements, outperforming classical reconstruction algorithms in both raw imaging accuracy and processing speed. The combination of parallel optical pattern generation and fast learned reconstruction is what pushes the system past video rates for dynamic scenes.</p>
<p>Dr. Myoung-Gyun Suh, Senior Scientist and Group Head at NTT Research&#8217;s Physics and Informatics Laboratories and lead author of the study, emphasized the significance of the combined approach. By merging the inherent parallelism and precision of optical frequency combs with the reconstruction capabilities of a Transformer-based deep learning model, he noted, the team eliminated the sequential projection bottleneck and significantly improved imaging speed and fidelity. He added that the hardware-software co-design dramatically simplifies the optical front end, making high-fidelity dynamic ghost imaging highly viable for size-constrained scenarios such as single-use endomicroscopic probes.</p>
<p>The implications extend well beyond the laboratory bench. Because the entire optical front end consists of a single-core fiber and a single-pixel detector, the architecture is naturally compatible with the narrow, flexible probes that endomicroscopy requires, and one example application highlighted by the researchers is neurosurgical endomicroscopy, where a minimally invasive optical probe must reach deep, confined anatomy. The same properties also suit portable sensing in other constrained environments where cameras and scanning optics cannot fit. By demonstrating the concept experimentally on dynamic targets, the team has moved ghost imaging a significant step toward practical deployment in real-world biomedical applications, freeing the technique from the optical table and bringing it closer to clinical neurosurgical and diagnostic use.</p>
<p><strong>Subject of Research:</strong> Dual-comb ghost imaging with deep learning reconstruction for minimally invasive fiber-based endomicroscopy</p>
<p><strong>Article Title:</strong> Breakthrough in optical-fiber-based minimally invasive imaging using optical frequency combs and deep learning</p>
<p><strong>Article References:</strong> Breakthrough in optical-fiber-based minimally invasive imaging using optical frequency combs and deep learning. (n.d.). <a href="https://www.eurekalert.org/news-releases/1146096" rel="noopener noreferrer">Original publication</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> Not provided</p>
<p><strong>Keywords:</strong> ghost imaging, optical frequency combs, deep learning, Transformer model, endomicroscopy, single-pixel imaging, dual-comb interferometry, wavelength-division multiplexing, hyperspectral imaging, computational imaging, biomedical optics, minimally invasive imaging</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">218658</post-id>	</item>
		<item>
		<title>AI Predicts Hidden Freezing Depths Threatening Cold-Region Canal Slopes</title>
		<link>https://scienmag.com/ai-predicts-hidden-freezing-depths-threatening-cold-region-canal-slopes/</link>
		
		<dc:creator><![CDATA[Violet Maxwell]]></dc:creator>
		<pubDate>Wed, 23 Sep 2026 21:52:29 +0000</pubDate>
				<category><![CDATA[Earth Science]]></category>
		<category><![CDATA[canal slope stability]]></category>
		<category><![CDATA[climate change influence on freeze-thaw cycles]]></category>
		<category><![CDATA[cold-region canal maintenance challenges]]></category>
		<category><![CDATA[cold-region canals]]></category>
		<category><![CDATA[deep ground temperature estimation in cold regions]]></category>
		<category><![CDATA[effects of soil freezing on canal infrastructure]]></category>
		<category><![CDATA[engineering solutions for freeze-induced slope failure]]></category>
		<category><![CDATA[environmental impacts of winter soil freeze-th]]></category>
		<category><![CDATA[Freeze-thaw cycle impact on canal slope stability]]></category>
		<category><![CDATA[freeze-thaw cycles]]></category>
		<category><![CDATA[frost heave]]></category>
		<category><![CDATA[geotechnical engineering]]></category>
		<category><![CDATA[ground heaving and ground collapse in frozen soils]]></category>
		<category><![CDATA[LSTM]]></category>
		<category><![CDATA[Machine learning]]></category>
		<category><![CDATA[machine learning for ground temperature prediction]]></category>
		<category><![CDATA[remote sensing and data-driven approaches for slope monitoring]]></category>
		<category><![CDATA[SHAP interpretability]]></category>
		<category><![CDATA[slope failure risk assessment in permafrost areas]]></category>
		<category><![CDATA[soil freezing]]></category>
		<category><![CDATA[soil temperature prediction]]></category>
		<category><![CDATA[soil temperature reconstruction using shallow data]]></category>
		<category><![CDATA[time-series forecasting]]></category>
		<category><![CDATA[Transformer model]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=210625</guid>

					<description><![CDATA[Researchers used seven machine-learning models, led by Transformer and LSTM architectures, to reconstruct deep soil temperatures in cold-region canal slopes from shallow monitoring data, revealing depth-dependent accuracy and physically consistent drivers.]]></description>
										<content:encoded><![CDATA[<p>Deep beneath the earthen slopes of canals that thread through some of the world&#8217;s coldest inhabited regions, an invisible battle plays out every winter. Water trapped in the soil freezes, expands, and heaves the ground upward; when spring arrives, the ice melts and the ground collapses back down. Repeated over years, this freeze-thaw cycle can crack canal linings, deform embankments, and in the worst cases trigger slope failures that cut off water supplies to farms and cities. A new study published in Earth Science Informatics offers a way to peer into that hidden zone without burying armies of sensors, using machine learning to reconstruct deep ground temperatures from the shallower, cheaper data that engineers already collect.</p>
<p>The research team, led by Huasu Fang of the Heilongjiang Province Hydraulic Research Institute together with colleagues from the Institute of Engineering Mechanics of the China Earthquake Administration and Harbin University of Science and Technology, focused on canal slopes in a cold region of northeastern China. Their goal was deceptively simple to state but difficult to achieve: estimate temperatures at depths of 100 to 250 centimeters at the same moments when shallower measurements were taken, using only information available at or before those moments. Deep temperature monitoring of this kind is expensive, and sensors buried in frozen, wet soil are notoriously prone to failure, leaving dangerous gaps in the record precisely where frost damage begins.</p>
<p>To build their dataset, the researchers assembled 204 irregularly spaced multi-depth observations collected between 2018 and 2022, pairing each with a rich set of predictors drawn from meteorological conditions, hydrological variables, surface and shallow-ground temperatures, soil moisture, and seasonal indicators such as the phase of the annual cycle. This multi-source framing matters because the temperature at two meters below a canal slope is not simply a delayed copy of the air temperature above it; it is shaped by snow cover, solar radiation, water movement in the soil, and the slow conduction of heat through layered earth materials. By feeding all of these influences into the models, the team gave the algorithms a physically meaningful picture of the system rather than a single temperature trace.</p>
<p>Seven machine-learning models were put through their paces, spanning classical approaches such as support vector regression, random forests, and XGBoost alongside deep learning architectures including long short-term memory networks, better known as LSTM, and the Transformer, the attention-based architecture that has revolutionized fields from language translation to weather forecasting. Model selection was carried out with two-fold forward-chaining validation, a scheme that respects the ordered nature of time-series data by training on earlier periods and testing on later ones. The models were then refitted on data from 2018 to 2021 and evaluated on an independent test set from 2022, a design that guards against the optimism that arises when a model is judged on data it has already seen.</p>
<p>The verdict was that the two deep learning approaches stood out. Transformer and LSTM delivered the most competitive overall performance across the depth range, with the Transformer achieving depth-averaged error metrics of 0.968 degrees Celsius in mean absolute error and 1.188 degrees Celsius in root mean square error, a normalized root mean square error of 30.89 percent, and a coefficient of determination of 0.886. In practical terms, the model could reconstruct temperatures several feet underground with an accuracy close to one degree, a level of precision that could make the difference between detecting an incipient frost problem and missing it entirely. Yet the team was careful about overclaiming: when pairwise comparisons of root mean square error were subjected to paired moving-block bootstrap tests and corrected for multiple comparisons using the Holm procedure, none of the Transformer&#8217;s advantages over rival models remained statistically significant. The edge was real in magnitude but not decisive in a statistical sense, a nuance that reflects the genuine difficulty of the prediction task.</p>
<p>Before turning to prediction, the researchers first characterized how temperature behaves as it travels downward through the slope. The records showed the two classic signatures of heat conduction in soil: progressive attenuation, meaning the seasonal swing in temperature shrinks with depth, and phase delay, meaning the annual warm and cold peaks arrive later the deeper one looks. Summer heat that scorchers the surface in July may not reach its maximum influence at 250 centimeters until well into autumn, and winter cold penetrates in similarly lagged fashion. These evolutionary patterns are not academic curiosities; they dictate how deeply frost penetrates, how long frozen layers persist, and how much heave and settlement a slope endures over a season.</p>
<p>The team also tested how well the models could identify whether the ground was frozen or thawed, a binary distinction that matters enormously for frost heave prediction. Frozen-state identification proved reliable at depths of 100 and 120 centimeters, where freeze-thaw transitions are frequent and strongly expressed, but weakened at 150 and 180 centimeters. At 200 and 250 centimeters, the test set contained no frozen observations at all, meaning the deepest soil at the site never crossed the freezing threshold during the evaluation year. This depth-dependent reliability is a candid reminder that data-driven models inherit the structure of their training data: where the physics is active and the labels abundant, they excel; where transitions are rare or absent, their skill remains unverified.</p>
<p>One of the study&#8217;s most valuable contributions is its use of SHAP, or SHapley Additive exPlanations, a technique borrowed from cooperative game theory that assigns each input variable a quantified share of the model&#8217;s output. Rather than treating the neural networks as black boxes, the researchers could ask which predictors actually drove the deep temperature estimates. The answer aligned neatly with the physics. Temperatures measured at 50 and 80 centimeters, the shallow layers closest to the atmosphere, dominated the model&#8217;s contributions, acting as a thermal memory from which deeper conditions could be inferred. Meanwhile, the importance of seasonal-phase variables grew steadily with depth, mirroring the increasing phase lag of the seasonal signal. The explainability analysis thus served as an independent check that the models had learned genuine thermal dynamics rather than spurious correlations.</p>
<p>The implications extend well beyond a single canal. Canals in seasonally frozen regions are lifelines for agriculture and water delivery across vast stretches of North America, northern Europe, Central Asia, and China, and climate warming is altering freeze-thaw regimes in ways that make historical design assumptions increasingly unreliable. Related efforts have applied artificial intelligence to permafrost and active-layer temperatures on the Alaskan North Slope and to soil temperature forecasting in subtropical grazing lands, suggesting a broader movement toward data-driven cryosphere monitoring. The framework presented here adds an important engineering dimension to that movement, showing that a site-specific model can serve as a complement to direct deep-ground monitoring, particularly when deep sensors are sparse, degraded, or temporarily offline.</p>
<p>The authors are careful to position the approach as a supplement rather than a replacement for physical instrumentation. Machine-learning reconstructions are only as good as the shallow observations and auxiliary data they are trained on, and the site-specific nature of the models means they cannot simply be transplanted to new locations without retraining. Still, the combination of rigorous time-series validation, bootstrap-based significance testing, phase-specific error analysis, and SHAP interpretability sets a high methodological standard for a field where black-box predictions are too often accepted at face value. For engineers charged with keeping frozen slopes stable, the study offers something genuinely useful: a way to estimate what is happening at depths they cannot easily measure, grounded in data they already have, with an honest accounting of where the estimates can be trusted and where uncertainty still reigns. As sensors fail and climates shift, that ability to intelligently fill the gaps in the thermal record may prove one of the quiet but essential technologies of cold-region water infrastructure.</p>
<p><strong>Subject of Research:</strong> Machine-learning-based prediction of deep ground temperature fields in cold-region canal slopes</p>
<p><strong>Article Title:</strong> Evolutionary patterns and intelligent prediction of temperature fields in cold-region canal slopes</p>
<p><strong>Article References:</strong> Fang, H., Wang, M., Hai, M., Zhou, B., Liu, Y., &amp; Chen, L. (2026). Evolutionary patterns and intelligent prediction of temperature fields in cold-region canal slopes. <em>Earth Science Informatics, 19</em>(11), Article 193. <a href="https://doi.org/10.1007/s12145-026-02245-0" rel="noopener noreferrer">https://doi.org/10.1007/s12145-026-02245-0</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s12145-026-02245-0" rel="noopener noreferrer">10.1007/s12145-026-02245-0</a></p>
<p><strong>Keywords:</strong> cold-region canals, soil temperature prediction, machine learning, Transformer model, LSTM, freeze-thaw cycles, frost heave, SHAP interpretability, soil freezing, geotechnical engineering, time-series forecasting, canal slope stability</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">210625</post-id>	</item>
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		<title>Transformer AI Predicts CNC Machining Errors Before the First Cut</title>
		<link>https://scienmag.com/transformer-ai-predicts-cnc-machining-errors-before-the-first-cut/</link>
		
		<dc:creator><![CDATA[Denise Maddox]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 22:39:04 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[AI in digital manufacturing]]></category>
		<category><![CDATA[AI-driven CNC process optimization]]></category>
		<category><![CDATA[Bi-LSTM comparison]]></category>
		<category><![CDATA[CNC machine error simulation]]></category>
		<category><![CDATA[CNC machining]]></category>
		<category><![CDATA[CNC machining error prediction]]></category>
		<category><![CDATA[cycle time error estimation]]></category>
		<category><![CDATA[cycle time prediction]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning for manufacturing]]></category>
		<category><![CDATA[digital twin]]></category>
		<category><![CDATA[G-code]]></category>
		<category><![CDATA[G-code error forecasting]]></category>
		<category><![CDATA[machine tools]]></category>
		<category><![CDATA[precision manufacturing]]></category>
		<category><![CDATA[predictive maintenance in manufacturing]]></category>
		<category><![CDATA[sequence-to-sequence learning]]></category>
		<category><![CDATA[servo dynamics]]></category>
		<category><![CDATA[sub-micrometer accuracy in machining]]></category>
		<category><![CDATA[tool-path deviation prediction]]></category>
		<category><![CDATA[tool-path error]]></category>
		<category><![CDATA[Transformer AI]]></category>
		<category><![CDATA[Transformer model]]></category>
		<category><![CDATA[Transformer models for CNC]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=199336</guid>

					<description><![CDATA[Researchers have developed a Transformer-based deep learning model that predicts CNC tool-path and cycle time errors directly from G-code with sub-micrometer and sub-millisecond accuracy.]]></description>
										<content:encoded><![CDATA[<p>Every machined part begins its life as a stream of G-code, the terse numeric language that tells a computer numerical control (CNC) machine tool where to move and how fast. Yet the path the tool actually carves is never quite the one the programmer wrote. Interpolators, acceleration and deceleration controllers, feedback loops and servo dynamics all conspire to bend, lag and smooth the commanded trajectory, producing tool-path deviations measured in micrometers and cycle times that drift by milliseconds. For precision manufacturers, those tiny discrepancies matter enormously, and predicting them before a single chip flies has long been a stubborn challenge. Now, researchers in Japan have shown that a Transformer-based deep learning model — the same architectural family behind modern language models — can forecast both tool-path and cycle time errors directly from raw G-code, with sub-micrometer and sub-millisecond accuracy.</p>
<p>The study, published in Results in Engineering by Kazuki Kaneko and Zongze Li, addresses a fundamental blind spot in digital manufacturing. Computer-aided manufacturing (CAM) software can simulate geometry and generate tool paths from a CAD model, but it cannot simulate what happens inside the machine&#8217;s controller. The G-code is filtered by the CNC interpolator, feedforward controllers and feedback control loops before it ever reaches the servomotors, and these proprietary algorithms are closely guarded black boxes maintained by machine tool builders. Physical modeling of this chain is extraordinarily difficult precisely because the control algorithms are secret and the dynamics are deeply nonlinear. The result is that manufacturers often discover machining errors only after cutting — or resort to time-consuming air runs in which the machine executes the program without a workpiece just to observe its behavior.</p>
<p>The authors reframed the problem as one of sequence translation. From a data-processing perspective, G-code execution is a stream of discrete commands fed row by row into a black-box system that emits corresponding sequences of tool-path and cycle time errors. Predicting those errors for a given program is therefore fundamentally a sequence-to-sequence problem — exactly the kind of task at which Transformers excel. Unlike recurrent networks or long short-term memory (LSTM) models, which process sequences step by step, a Transformer uses multi-head self-attention to derive global relational weights across all positions simultaneously. This allows it to capture long-range temporal dependencies, such as how a sharp corner several blocks ahead causes the servo system to decelerate and how a large acceleration from a previous segment continues to influence subsequent commands as the transient response gradually decays.</p>
<p>The researchers drew a striking analogy between the Transformer&#8217;s internal machinery and the physics of a CNC controller. In their framing, the query represents the motion state of the current G-code command, while the keys and values carry error features of the surrounding tool path; scaled dot-product attention then assigns weights to nearby and distant blocks, mirroring the feedforward and feedback structure of a real servo loop. Position-wise feedforward networks introduce the nonlinear modeling capacity needed to emulate local servo behaviors such as PID control and friction, while residual connections — which pass inputs directly forward — resemble a closed-loop feedback system that focuses on predicting small dynamic deviations rather than reconstructing the entire tool path. Layer normalization, meanwhile, stabilizes the wildly different physical scales of position increments and feed rates, functioning much like a gain stabilizer in a servo drive.</p>
<p>Training such a model requires data that spans the machine&#8217;s full dynamic repertoire, so the team avoided reliance on specific workpiece geometries, which would limit generalization. Instead, they semi-randomly generated ten sets of training G-code combining local blending segments, where the path passes directly through control points, and global blending segments, where B-spline interpolation smooths the trajectory at constant feed rate. Displacements and feed rates were drawn randomly from defined ranges, producing tool paths with varied travel ranges and frequent direction changes. Each program was then executed on a real three-axis ROBODRILL machine equipped with a Fanuc Series 31i controller, and actual tool-path data were captured at a sampling frequency of 1 kHz using Fanuc&#8217;s SERVO Guide monitoring software. The training targets were thus experimentally measured servo responses rather than virtual simulations, grounding the digital twin in physical reality.</p>
<p>The model itself is an encoder-only Transformer with a model dimension of 512, eight layers and four attention heads, trained for 2000 epochs on a workstation with an RTX 4090 GPU. Input sequences consisted of nominal positional increments along the three feed axes plus the commanded feed rate, segmented into windows of 32 control points using a causal sliding window. The output comprised the three-dimensional tool-path error and the cumulative cycle time error at each point. Notably, the authors found that longer input sequences converged more slowly without improving final accuracy — a result that aligns neatly with servo physics, since the transient influence of any single command naturally fades over time. When compared against a Bi-LSTM model of equal dimensions trained on identical data, the Transformer converged in roughly 500 epochs, three times faster than its recurrent rival.</p>
<p>Validation was carried out on six G-code programs derived from two physical specimens: a 25-millimeter-radius hemispherical part machined along morphing spiral and bidirectional paths, and a complex artifact geometry, each run at nominal feed rates of 1000 and 3000 millimeters per minute. The results were decisive. Both models avoided large systematic bias, with mean prediction deviations generally within ±1 micrometer or millisecond, but the Transformer&#8217;s uncertainty bands were roughly 1.5 to 2 times tighter than the Bi-LSTM&#8217;s across all error components — and in some conditions nearly four times tighter. Its error distributions clustered markedly more sharply around zero, and while the Bi-LSTM&#8217;s cycle time root-mean-square error ballooned to about 8 milliseconds on the most demanding program against a mean error of 2.5 milliseconds, the Transformer suppressed such outliers, keeping RMSE close to MAE.</p>
<p>The comparison also revealed how differently the two architectures degrade under stress. Higher feed rates inherently reduce the accuracy of the controller&#8217;s feedforward and feedback loops, and the Bi-LSTM&#8217;s errors doubled or even tripled when the feed rate rose from 1000 to 3000 millimeters per minute. The Transformer, by contrast, showed far more graceful degradation, keeping mean errors below 2 micrometers or milliseconds even on the most challenging high-speed program. The authors attribute the residual errors that remain — small but nonzero — to highly random mechanical nonlinearities such as micro-friction variations and backlash during axis reversals, along with the quantization limits of encoder feedback at the 1 kHz sampling rate.</p>
<p>Perhaps the most industrially compelling result is speed. Predicting errors for an entire validation program took the Transformer less than 3.5 seconds, regardless of program complexity, whereas air-running the same programs on the machine took anywhere from roughly 38 to 202 seconds. Because prediction time depends only on G-code length, the trained model can instantly screen massive production programs offline, eliminating the need for preliminary air runs and sharpening both production scheduling and machining efficiency. The approach does not generalize across machines — each machine tool has unique controller and mechanical characteristics — but the authors emphasize that adapting to a new machine requires only executing the training G-codes, acquiring a fresh dataset and retraining, after which the model serves as a customized digital surrogate for that specific machine.</p>
<p>The work points toward a future in which every machine tool carries its own learned digital twin, capable of vetting programs before metal is ever cut. The team&#8217;s next steps include extending the model to account for cutting force-induced deflections of tool and workpiece, which superimpose on servo tracking errors in real machining; probing how specific G-code features such as control point density affect prediction performance; scaling the sequence-to-sequence methodology to five-axis simultaneous machining; and developing real-time servo signal acquisition for online error prediction during actual cutting. They also plan to build open-architecture experimental CNC systems, since proprietary commercial controllers block the integration of theoretical control equations needed for hybrid physical-digital modeling. If those ambitions pan out, the humble G-code file may one day arrive at the shop floor already annotated with a complete forecast of its own imperfections.</p>
<p><strong>Subject of Research:</strong> Transformer-based deep learning prediction of tool-path and cycle time errors in CNC machining from G-code</p>
<p><strong>Article Title:</strong> Prediction of tool-path and cycle time errors of CNC machining using a transformer-based deep learning model</p>
<p><strong>Article References:</strong> Kaneko, K., &amp; Li, Z. (2026). Prediction of tool-path and cycle time errors of CNC machining using a transformer-based deep learning model. <em>Results in Engineering, 32</em>, Article 112872. <a href="https://doi.org/10.1016/j.rineng.2026.112872" rel="noopener noreferrer">https://doi.org/10.1016/j.rineng.2026.112872</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1016/j.rineng.2026.112872" rel="noopener noreferrer">10.1016/j.rineng.2026.112872</a></p>
<p><strong>Keywords:</strong> CNC machining, Transformer model, deep learning, digital twin, tool-path error, cycle time prediction, G-code, servo dynamics, Bi-LSTM comparison, precision manufacturing, sequence-to-sequence learning, machine tools</p>
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