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	<title>proteomics in cancer research &#8211; Science</title>
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	<title>proteomics in cancer research &#8211; Science</title>
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		<title>RNA Acetylation Enzyme NAT10 Helps Glioblastoma Resist Radiotherapy</title>
		<link>https://scienmag.com/rna-acetylation-enzyme-nat10-helps-glioblastoma-resist-radiotherapy/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 14:11:07 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[acRIP-seq technique in cancer studies]]></category>
		<category><![CDATA[drug repurposing]]></category>
		<category><![CDATA[epitranscriptomics]]></category>
		<category><![CDATA[ferroptosis]]></category>
		<category><![CDATA[Glioblastoma]]></category>
		<category><![CDATA[glioblastoma radioresistance]]></category>
		<category><![CDATA[immune activation in glioblastoma treatment]]></category>
		<category><![CDATA[immunogenic cell death]]></category>
		<category><![CDATA[molecular mechanisms of glioblastoma survival]]></category>
		<category><![CDATA[N4-acetylcytidine]]></category>
		<category><![CDATA[NAT10]]></category>
		<category><![CDATA[NAT10 enzyme in brain cancer]]></category>
		<category><![CDATA[novel therapeutic targets for brain tumors]]></category>
		<category><![CDATA[overcoming radiotherapy resistance in glioblastoma]]></category>
		<category><![CDATA[pemetrexed]]></category>
		<category><![CDATA[proteomics in cancer research]]></category>
		<category><![CDATA[radioresistance]]></category>
		<category><![CDATA[radiotherapy]]></category>
		<category><![CDATA[RNA acetylation in glioblastoma]]></category>
		<category><![CDATA[RNA modifications and tumor resistance]]></category>
		<category><![CDATA[role of RNA-modifying enzymes in cancer]]></category>
		<category><![CDATA[SLC7A11]]></category>
		<category><![CDATA[targeting NAT10 for cancer therapy]]></category>
		<category><![CDATA[tumor microenvironment]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=195171</guid>

					<description><![CDATA[Researchers found that the RNA acetyltransferase NAT10 helps glioblastoma resist radiotherapy by stabilizing SLC7A11 mRNA and blocking immunogenic ferroptosis, and that repurposing pemetrexed to inhibit NAT10 synergizes with radiation in preclinical models.]]></description>
										<content:encoded><![CDATA[<p>Glioblastoma, the most aggressive and deadly form of brain cancer, has long defied the best efforts of oncologists. Even with surgery, chemotherapy, and the standard course of radiation therapy, most patients survive little more than a year after diagnosis, largely because their tumors harbor an uncanny ability to shrug off ionizing radiation. Now a team of researchers in China has uncovered a previously underappreciated molecular trick that glioblastoma cells use to survive radiotherapy, and in doing so they may have opened a new door for treatment. The study, published in the Journal of Experimental &amp; Clinical Cancer Research, identifies the RNA-modifying enzyme N-acetyltransferase 10, commonly known as NAT10, as a central driver of radioresistance in glioblastoma, and shows that disabling this enzyme can flip tumors from radiation-resistant to radiation-sensitive while simultaneously awakening the immune system against the cancer.</p>
<p>The research was led by a multidisciplinary team at Guangdong Provincial People&#8217;s Hospital affiliated with Southern Medical University, together with collaborators at several other Chinese institutions. The investigators combined quantitative proteomics, a technique that measures the full complement of proteins in cells, with N4-acetylcytidine RNA immunoprecipitation sequencing, or acRIP-seq, which maps a specific chemical tag deposited onto messenger RNA molecules. They also drew on CRISPR-based dependency screens, which systematically disable genes one by one to reveal which ones cancer cells cannot live without. This triple lens allowed them to sift through the molecular chaos of radiation-resistant glioblastoma cells and pinpoint NAT10 as a standout culprit whose activity correlates with both treatment failure and poor patient survival.</p>
<p>NAT10 is what scientists call a writer of the epitranscriptome, the layer of chemical modifications that adorn RNA molecules without altering the underlying genetic sequence. Specifically, NAT10 installs a modification called N4-acetylcytidine, abbreviated ac4C, onto messenger RNAs. These chemical tags act like molecular Post-it notes, influencing how stable an RNA molecule is and how efficiently it is translated into protein. While aberrant RNA modifications have increasingly been implicated in cancer progression, the specific epitranscriptomic vulnerabilities that allow glioblastoma to withstand radiation had remained largely unexplored. The new study fills that gap with an unusually detailed mechanistic account.</p>
<p>At the heart of the discovery lies a gene called SLC7A11, which encodes a cellular transporter responsible for importing cystine, a building block of the antioxidant glutathione. Using acRIP-seq, the researchers found that NAT10 deposits ac4C marks directly onto SLC7A11 messenger RNA. These marks stabilize the transcript and enhance its translation into protein, effectively turning up the volume on the cell&#8217;s antioxidant machinery. The consequences are profound for a tumor facing radiation. Ionizing radiation kills cells in part by generating reactive oxygen species that damage DNA and membranes. A cell brimming with glutathione and the protective enzyme glutathione peroxidase 4, or GPX4, is well armored against this oxidative barrage, and elevated SLC7A11 provides exactly that armor.</p>
<p>The study goes further by connecting this antioxidant shield to a form of cell death that has captivated cancer biologists in recent years: ferroptosis. Ferroptosis is an iron-dependent demise driven by the accumulation of lipid peroxides in cellular membranes, and it can be unleashed when antioxidant defenses, particularly the glutathione-GPX4 axis, falter. The researchers demonstrated that glioblastoma cells with high NAT10 activity evade radiation-induced ferroptosis by keeping SLC7A11 levels high. When the team used a catalytically inactive mutant of NAT10, designated NAT10-G641E, they confirmed that the enzyme&#8217;s acetylation activity, not some unrelated function, was responsible for the effect. RNA stability assays and polysome profiling, which measure how actively messenger RNAs are being translated, reinforced the causal chain from NAT10, through ac4C on SLC7A11 mRNA, to antioxidant capacity and ferroptosis resistance.</p>
<p>Perhaps the most striking finding is that interfering with NAT10 does more than simply make tumor cells easier to kill. When glioblastoma cells lose their NAT10-driven antioxidant defenses and undergo ferroptosis in response to radiation, they die in a way that rings alarm bells for the immune system. This phenomenon, known as immunogenic cell death, involves the release of damage-associated molecular patterns such as calreticulin, adenosine triphosphate, and high mobility group box 1, which promote the maturation of dendritic cells and activate cytotoxic CD8-positive T cells. In orthotopic mouse models, where tumors are grown inside the brain, NAT10 inhibition triggered what the authors describe as a cold-to-hot transformation of the tumor microenvironment, converting an immunosuppressive, T-cell-poor landscape into one teeming with tumor-fighting immune cells.</p>
<p>This immunological dimension matters because glioblastoma has been notoriously refractory to immunotherapy. Its brain location, the blood-brain barrier, and a profoundly immunosuppressive microenvironment rich in suppressive myeloid cells have conspired to defeat most attempts to harness the immune system against it. A therapy that simultaneously lowers the biochemical threshold for radiation killing and recruits an immune response offers a two-pronged attack that could be more potent than either approach alone. The findings suggest that ferroptosis, long studied primarily as a cell-intrinsic vulnerability, can serve as a bridge between radiotherapy and anticancer immunity in the brain.</p>
<p>Translating this biology into a therapy required a practical inhibitor of NAT10. Existing NAT10 inhibitors carry toxicity concerns that limit their appeal, so the research team turned to computational drug repurposing, screening approved drugs for the ability to disrupt the NAT10-ac4C-SLC7A11 axis. Their search converged on pemetrexed, an antifolate chemotherapy already in clinical use for other cancers. In their experiments, pemetrexed suppressed NAT10 activity, destabilized SLC7A11 messenger RNA, and stripped glioblastoma cells of their glutathione supply. When combined with radiotherapy in mouse models, pemetrexed produced profound synergistic survival benefits, validating the repurposing strategy and offering a potentially safer path to the clinic than purpose-built NAT10 inhibitors.</p>
<p>The study also carries prognostic weight for patients. By analyzing patient cohorts, the researchers showed that NAT10 expression correlates with poor overall survival and poor progression-free survival in glioblastoma, positioning the enzyme as both a biomarker of aggressive disease and a therapeutic target. The work received ethics approval from the review board of Guangdong Provincial People&#8217;s Hospital and the Animal Ethics Committee of Nanfang Hospital, and it was funded by the National Natural Science Foundation of China along with provincial and municipal science foundations in Guangdong and Guangzhou.</p>
<p>For a cancer that has seen precious few therapeutic advances in decades, the convergence of RNA modification biology, ferroptosis, and immunology in a single actionable axis is notable. The results imply that doctors might one day stratify glioblastoma patients by NAT10 activity, administer pemetrexed alongside standard radiotherapy to collapse the tumors&#8217; antioxidant defenses, and thereby convert a silently resistant tumor into an immunologically visible one. Considerable work remains before such a regimen reaches patients, including clinical trials to establish dosing, safety, and efficacy in humans with brain tumors. But the study provides a rigorous mechanistic foundation for that effort, demonstrating with molecular precision how a single RNA writer enzyme can govern whether radiation becomes a lethal blow to a tumor or merely a wound that heals. In the difficult landscape of glioblastoma research, findings of this clarity are rare, and they renew hope that even the most radiation-resistant cancers can be made vulnerable through a deeper understanding of their chemistry.</p>
<p><strong>Subject of Research:</strong> NAT10-mediated RNA acetylation driving glioblastoma radioresistance through suppression of immunogenic ferroptosis</p>
<p><strong>Article Title:</strong> N-acetyltransferase 10 promotes glioblastoma radioresistance by suppressing immunogenic ferroptosis through N4-acetylcytidine of SLC7A11 mRNA</p>
<p><strong>Article References:</strong> Hu, S., Cheng, J., Liu, Y., Chen, C., Qiu, R., Liu, Y., Zhang, Q., Xie, Y., Wan, B., Tan, P., Xie, D., Lei, Y., Luo, H., Feng, W., Deng, Y., Hua, X., Ren, C., &amp; Du, S. (2026). N-acetyltransferase 10 promotes glioblastoma radioresistance by suppressing immunogenic ferroptosis through N4-acetylcytidine of SLC7A11 mRNA. <em>Journal of Experimental &amp;amp; Clinical Cancer Research</em>. <a href="https://doi.org/10.1186/s13046-026-03822-3" rel="noopener noreferrer">https://doi.org/10.1186/s13046-026-03822-3</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s13046-026-03822-3" rel="noopener noreferrer">10.1186/s13046-026-03822-3</a></p>
<p><strong>Keywords:</strong> glioblastoma, NAT10, N4-acetylcytidine, radioresistance, ferroptosis, SLC7A11, pemetrexed, immunogenic cell death, epitranscriptomics, radiotherapy, tumor microenvironment, drug repurposing</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">195171</post-id>	</item>
		<item>
		<title>FAM120A acts as a new effector in progranulin/EphA2-driven bladder cancer</title>
		<link>https://scienmag.com/fam120a-acts-as-a-new-effector-in-progranulin-epha2-driven-bladder-cancer/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sun, 06 Sep 2026 00:11:52 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[biomarker development for bladder cancer]]></category>
		<category><![CDATA[biomarkers for bladder cancer aggressiveness]]></category>
		<category><![CDATA[bladder cancer molecular mechanisms]]></category>
		<category><![CDATA[EphA2 interactome mapping]]></category>
		<category><![CDATA[EphA2 receptor tyrosine kinase in cancer]]></category>
		<category><![CDATA[FAM120A role in bladder tumor progression]]></category>
		<category><![CDATA[FAM120A role in cancer progression]]></category>
		<category><![CDATA[identification of cancer effector proteins]]></category>
		<category><![CDATA[molecular players in bladder cancer metastasis]]></category>
		<category><![CDATA[molecular targets for bladder cancer treatment]]></category>
		<category><![CDATA[progranulin/EphA2 signaling pathway in bladder cancer]]></category>
		<category><![CDATA[proteomics in cancer research]]></category>
		<category><![CDATA[role of FAM120A in tumor aggressiveness]]></category>
		<category><![CDATA[scaffold proteins in oncogenic signaling]]></category>
		<category><![CDATA[signaling circuits governing bladder tumor growth]]></category>
		<category><![CDATA[targeted therapies for bladder cancer]]></category>
		<category><![CDATA[targeted therapy development in bladder cancer]]></category>
		<category><![CDATA[tumor cell motility and invasion mechanisms]]></category>
		<guid isPermaLink="false">https://scienmag.com/fam120a-acts-as-a-new-effector-in-progranulin-epha2-driven-bladder-cancer/</guid>

					<description><![CDATA[Bladder cancer remains one of the most lethal malignancies in the United States, with an estimated 84,530 new cases and 17,870 deaths projected in 2026 alone. Against this sobering backdrop, a team of international researchers has identified a previously underappreciated molecular player that helps drive the aggressiveness of this disease, offering fresh hope for both [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Bladder cancer remains one of the most lethal malignancies in the United States, with an estimated 84,530 new cases and 17,870 deaths projected in 2026 alone. Against this sobering backdrop, a team of international researchers has identified a previously underappreciated molecular player that helps drive the aggressiveness of this disease, offering fresh hope for both targeted therapies and biomarker development. In a study published in the Journal of Experimental &amp; Clinical Cancer Research, scientists led by Andrea Morrione of Temple University&#8217;s Sbarro Institute for Cancer Research and Molecular Medicine report that FAM120A, a scaffold protein long suspected of participating in oncogenic signaling, functions as a critical effector in the progranulin/EphA2 axis, a signaling circuit previously shown by the same group to govern bladder tumor cell motility, invasion, and tumor formation in living organisms.</p>
<p>The discovery began, as many modern cancer biology investigations do, with proteomics. Rather than examining proteins one at a time, the researchers mapped the EphA2 interactome, the full constellation of proteins that physically associate with the EphA2 receptor, under conditions of progranulin stimulation. EphA2, or erythropoietin-producing hepatocellular carcinoma receptor A2, is a receptor tyrosine kinase that has long been implicated in cancer progression, but its behavior is unusual among kinase receptors: while it participates in normal developmental signaling, it is frequently overexpressed in aggressive tumors where its oncogenic function is driven less by classical kinase activity and more by its ability to recruit and organize signaling complexes. Progranulin, a secreted growth factor better known for its role in neurodegeneration, notably frontotemporal dementia, wound healing, and immune regulation, binds EphA2 and triggers downstream cascades. By comparing the composition of EphA2&#8217;s protein partners in the presence and absence of progranulin, the team uncovered a set of progranulin-dependent interactors, among them FAM120A, also known as Family with Sequence Similarity 120 Member A.</p>
<p>FAM120A is what biologists call a scaffold protein, a molecule that does not necessarily catalyze chemical reactions itself but instead serves as a physical platform upon which other signaling proteins assemble. This architectural role makes scaffold proteins powerful amplifiers and organizers of cellular communication, and disruptions in their function are increasingly recognized as contributors to malignancy. Using tissue microarrays and immunohistochemistry, the investigators demonstrated that FAM120A protein levels are elevated in bladder cancer tissues compared with normal tissue, suggesting that the protein is not merely a passive passenger but an active participant in the disease process.</p>
<p>To establish causality rather than mere correlation, the researchers turned to a battery of functional assays. They depleted FAM120A in bladder cancer cell lines using lentiviral shRNA approaches, a technique that uses viral vectors to deliver short hairpin RNA molecules capable of silencing a specific gene. The consequences were striking. Cells lacking FAM120A lost much of their clonogenic capacity, the ability to form colonies from single founder cells, a hallmark of cancer cell self-renewal. Wound healing assays, in which a scratch is made across a confluent cell monolayer and the rate of gap closure measured, showed dramatically impaired migratory capacity. Invasion through Matrigel, a synthetic basement membrane that mimics the extracellular matrix tumors must degrade to metastasize, was similarly crippled. Even three-dimensional spheroid formation, an in vitro model that captures aspects of tumor architecture more faithfully than flat cell culture, was compromised without FAM120A.</p>
<p>The team then extended these findings to anchorage-independent growth, assessed by soft agar assays, a classical test of malignant transformation in which cells must proliferate while suspended in semi-solid medium, something normal cells cannot do. FAM120A-depleted cells failed this test, and, critically, the loss of FAM120A also suppressed tumor formation in vivo using xenograft models, in which human cancer cells are implanted into immunocompromised mice. These animal experiments, performed under protocols approved by the Institutional Review Board of Thomas Jefferson University, provide the strongest evidence yet that FAM120A is not simply associated with aggressive bladder cancer but is functionally required for it.</p>
<p>Mechanistically, the study dissected how FAM120A exerts its oncogenic influence. Progranulin stimulation of bladder cancer cells is known to activate two major signaling highways: the AKT pathway, central to cell survival and growth, and the ERK1/2 pathway, a canonical mitogen-activated protein kinase cascade driving proliferation. Using western immunoblots, the researchers showed that FAM120A depletion blunted progranulin-evoked activation of both AKT and ERK1/2, placing the scaffold protein upstream of these critical signaling events. Co-immunoprecipitation experiments and proximity ligation assays, a technique that detects proteins located within roughly 40 nanometers of each other in intact cells, confirmed that the physical interaction between EphA2 and FAM120A is enhanced upon progranulin stimulation. Immunofluorescence microscopy further revealed colocalization of the two proteins within cells, painting a picture of a dynamically assembled signaling complex that assembles when progranulin arrives and drives the aggressive behavior of bladder cancer cells.</p>
<p>Perhaps the most mechanistically illuminating findings concern the cytoskeleton. For a cancer cell to migrate and invade, it must continuously remodel its actin cytoskeleton, the meshwork of F-actin filaments that provides mechanical force and shape. The team observed that progranulin stimulation triggers F-actin rearrangements in bladder cancer cells, and that this rearrangement is inhibited when FAM120A is depleted. Tracing the pathway further, they identified the small GTPase RhoA, a master regulator of actin dynamics and cell contractility, as a key mediator. Progranulin-induced activation of RhoA was abolished upon FAM120A depletion, and the researchers concluded that FAM120A operates through ERK1/2 and RhoA-dependent pathways to orchestrate the cytoskeletal changes that enable motility and invasion. This work builds on insights from experts in Rho protein biology, with the authors acknowledging discussions with Dr. Kenneth L. Van Golen of the University of Delaware.</p>
<p>The translational implications of these findings are twofold. First, FAM120A emerges as a candidate drug target. Because scaffold proteins occupy a nodal position in signaling networks, disrupting the EphA2-FAM120A interaction or destabilizing FAM120A itself could, in principle, simultaneously cripple multiple oncogenic outputs, from AKT-mediated survival to RhoA-driven invasion. Second, and more immediately achievable, FAM120A holds promise as a biomarker. Its upregulation in bladder cancer tissues suggests it could aid diagnosis, and the authors argue its expression patterns may carry prognostic value, potentially helping clinicians identify patients whose tumors are most likely to progress.</p>
<p>There is also an intriguing therapeutic synergy buried in the data. The researchers found that depleting FAM120A sensitized bladder cancer cells to cisplatin, a cornerstone chemotherapy drug used in the treatment of muscle-invasive and metastatic bladder cancer. Cisplatin kills cells primarily by cross-linking DNA, but resistance is a persistent clinical problem. The observation that removing a scaffold protein from a growth factor signaling axis can restore chemosensitivity hints that combinations of standard chemotherapy with agents targeting the progranulin/EphA2/FAM120A circuitry could one day improve outcomes, though such strategies remain firmly in the preclinical realm.</p>
<p>The collaborative nature of the study reflects the complexity of the problem. The work united researchers from Temple University in Philadelphia, Thomas Jefferson University&#8217;s Sidney Kimmel Cancer Center, the University of Siena, the University of Milano-Bicocca, the University of Naples Federico II, the University of Catania, the Mayo Clinic Alix School of Medicine, and the S.H.R.O. Italia Foundation, with funding from the Sbarro Health Research Organization and National Institutes of Health grants supporting Thomas Jefferson University&#8217;s Translational Core Facility. Corresponding author Andrea Morrione and colleagues, including co-author Antonio Giordano, director of the Sbarro Institute, and veteran extracellular matrix researcher Renato V. Iozzo, brought complementary expertise in growth factor signaling, proteomics, tumor biology, and translational oncology to bear on the question.</p>
<p>Important caveats remain. The study relies heavily on cell lines and xenograft models, which, while informative, do not fully recapitulate the heterogeneity of human bladder tumors or the microenvironment in which they grow. Whether FAM120A expression levels correlate with patient outcomes in large clinical cohorts, whether the protein can be safely and effectively targeted pharmacologically, and how its function intersects with established bladder cancer drivers such as FGFR3 alterations and immune checkpoint pathways are questions that will require substantial further research. The fact that progranulin also participates in neurodegenerative disease adds another layer of complexity, as any therapeutic strategy modulating progranulin signaling must carefully consider effects beyond the tumor.</p>
<p>Nevertheless, the identification of FAM120A as an oncogenic effector in the progranulin/EphA2 axis represents a meaningful advance in understanding how bladder cancer cells acquire their invasive, treatment-resistant phenotype. By converting a proteomic observation into a mechanistic model validated across molecular, cellular, and animal levels, the study provides the scientific community with both a new lens on an established signaling pathway and a concrete starting point for the development of diagnostic markers and therapeutic interventions. For a disease that kills nearly 18,000 Americans each year, that is progress worth noting.</p>
<div class="scienmag-article-metadata"><strong>Subject of Research:</strong> The role of FAM120A as a scaffold protein and novel effector in the progranulin/EphA2 oncogenic signaling axis in bladder cancer</p>
<p><strong>Article Title:</strong> Functional characterization of FAM120A as a novel effector in the progranulin/EphA2 oncogenic axis in bladder cancer</p>
<p><strong>Article References:</strong> Satasiya, V., Martinelli, C., Pascal, G., Ducci, G., Ventura, E., Williams, S. J., Burk, S. R., Tchamou, M. N., Shani, S., Klain, M., Sacco, E., Vanoni, M., Belfiore, A., Iozzo, R. V., Giordano, A., &amp; Morrione, A. (2026). Functional characterization of FAM120A as a novel effector in the progranulin/EphA2 oncogenic axis in bladder cancer. <em>Journal of Experimental &amp; Clinical Cancer Research</em>. <a href="https://doi.org/10.1186/s13046-026-03808-1" target="_blank" rel="noopener noreferrer">https://doi.org/10.1186/s13046-026-03808-1</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s13046-026-03808-1" target="_blank" rel="noopener noreferrer">10.1186/s13046-026-03808-1</a></p>
<p><strong>Keywords:</strong> FAM120A, EphA2, Progranulin, Bladder cancer, Migration, Invasion, Anchorage-independent growth, AKT, ERK1/2, RhoA, Cisplatin sensitivity, Oncogenic signaling</p>
</div>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">188351</post-id>	</item>
		<item>
		<title>AI-Driven 3D Mapping Uncovers Intra-Tumor Diversity in Colorectal Cancer Through Deep Visual Multi-Omics</title>
		<link>https://scienmag.com/ai-driven-3d-mapping-uncovers-intra-tumor-diversity-in-colorectal-cancer-through-deep-visual-multi-omics/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Wed, 03 Jun 2026 16:45:35 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[3D reconstruction of tumor architecture]]></category>
		<category><![CDATA[advanced cancer biomarker discovery]]></category>
		<category><![CDATA[AI-driven 3D tumor mapping]]></category>
		<category><![CDATA[colorectal cancer molecular subtypes]]></category>
		<category><![CDATA[deep learning spatial transcriptomics]]></category>
		<category><![CDATA[high-resolution pathology imaging]]></category>
		<category><![CDATA[immune infiltration patterns in tumors]]></category>
		<category><![CDATA[intra-tumor heterogeneity in colorectal cancer]]></category>
		<category><![CDATA[multi-omics integration in oncology]]></category>
		<category><![CDATA[precision medicine for colorectal cancer]]></category>
		<category><![CDATA[proteomics in cancer research]]></category>
		<category><![CDATA[spatial biology of tumor microenvironment]]></category>
		<guid isPermaLink="false">https://scienmag.com/ai-driven-3d-mapping-uncovers-intra-tumor-diversity-in-colorectal-cancer-through-deep-visual-multi-omics/</guid>

					<description><![CDATA[A groundbreaking advancement in the understanding of tumor complexity has been unveiled by a team of researchers who developed an innovative deep learning framework integrating high-resolution pathology imaging with spatial transcriptomics and proteomics data. This novel approach, termed Deep Visual Spatial Transcriptomics and Proteomics (DVSTP), empowers scientists to decode the intricate intra-tumor heterogeneity through comprehensive [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>A groundbreaking advancement in the understanding of tumor complexity has been unveiled by a team of researchers who developed an innovative deep learning framework integrating high-resolution pathology imaging with spatial transcriptomics and proteomics data. This novel approach, termed Deep Visual Spatial Transcriptomics and Proteomics (DVSTP), empowers scientists to decode the intricate intra-tumor heterogeneity through comprehensive three-dimensional reconstruction of entire tumors. By facilitating the identification of molecular subtypes linked to immune infiltration patterns in colorectal cancer, DVSTP stands to revolutionize cancer biology and precision medicine.</p>
<p>Colorectal cancer remains one of the deadliest and most therapeutically challenging cancers globally. One of the primary obstacles in treating this malignancy stems from the tumor’s intrinsic heterogeneity: the varied cellular compositions and molecular profiles observed across different tumor regions. Traditional molecular techniques such as bulk sequencing aggregate signals from mixed cellular populations, obscuring the spatial context and thereby limiting insight into localized microenvironment interactions that govern tumor progression and drug resistance.</p>
<p>The research team, based at Union Hospital and Tongji Medical College, Huazhong University of Science and Technology, recognized the urgent need to preserve spatial context while interrogating molecular features. To this end, they engineered the DVSTP platform to harmonize three key modalities—high-resolution histopathology images stained with hematoxylin and eosin (H&amp;E), spatially-resolved transcriptomic profiles, and high-dimensional spatial proteomic data acquired via mass spectrometry. This integrative method fosters a multi-omics perspective where morphological, transcriptomic, and proteomic attributes converge.</p>
<p>Initially, the team curated a large cohort of 123 colorectal cancer specimens to develop a convolutional neural network capable of discerning diverse cell types—malignant epithelial cells, immune infiltrates, and stromal constituents—based solely on H&amp;E histology images. Impressively, the model achieved a classification accuracy of 94%, highlighting the rich, underexploited molecular information embedded within traditional pathology slides. This discovery underscores the untapped potential of computational pathology enhanced by artificial intelligence.</p>
<p>The true novelty of DVSTP arose when the researchers turned their attention to spatial heterogeneity within individual tumors. Utilizing serial sections from two anatomically distinct sites of a stage II colorectal carcinoma, they processed an extensive series of 380 tissue slices. The resulting datasets enabled meticulous three-dimensional reconstruction of tumor architecture, unveiling spatial cell organization and intercellular interactions with unprecedented resolution. This approach bridges a critical gap by revealing how cellular neighborhoods correlate with distinct molecular programs.</p>
<p>A comparative analysis between spatial transcriptomics and proteomics data revealed a surprisingly modest concordance between mRNA abundance and protein levels across tumor regions. With an average Spearman correlation coefficient of 0.37, these findings highlight the complex post-transcriptional regulatory mechanisms that modulate protein expression. This disparity affirms the necessity of incorporating direct proteomic measurements in spatial studies to authentically capture functional cellular states rather than relying solely on transcriptomic surrogates.</p>
<p>The proteomics component of the DVSTP analysis identified 2,805 proteins exhibiting diverse expression patterns throughout tumor territories. Clustering based on protein signatures stratified the tumor into four molecularly distinct subtypes, each defined by unique compositions of signaling pathways and biological processes. This granular classification offers a refined understanding of tumor biology that may inform stratified therapeutic interventions targeting specific tumor niches.</p>
<p>Strikingly, the study demonstrated that computational evaluation of routine pathological images alone could robustly predict molecular profiles. The deep learning model achieved an area under the curve (AUC) of 0.718 for predicting spatial protein expression patterns from H&amp;E images, improving to 0.755 when transcriptomic data were integrated. These findings eloquently attest to the latent molecular insights encoded within tissue morphology, foreshadowing a future where diagnostic imaging and AI coalesce to guide clinical decision-making.</p>
<p>Among the diverse protein markers characterized, Serine/Arginine-Rich Splicing Factor 6 (SRSF6) emerged as a pivotal molecule delineating spatial heterogeneity and immunological landscapes within colorectal tumors. Regions exhibiting elevated SRSF6 expression correlated with pronounced exclusion of CD4⁺ and CD8⁺ T cells, highlighting an immunosuppressive microenvironment that likely promotes tumor immune evasion. This association positions SRSF6 as a central architect of the tumor-immune interface.</p>
<p>Mechanistic validation through in vitro and in vivo experiments reinforced the role of SRSF6 in driving colorectal cancer progression. Overexpression of Srsf6 in cancer cell lines and mouse models enhanced migratory capacity and tumor growth while concomitantly diminishing T cell infiltration. Conversely, genetic knockdown of Srsf6 reversed these phenotypes, illustrating its functional contribution to both tumor aggressiveness and immune modulation. Clinically, elevated SRSF6 expression portended poorer overall survival, underscoring its prognostic significance.</p>
<p>The researchers emphasize that although emerging spatial omics platforms are rapidly evolving, technological constraints regarding resolution and cost have thus far limited widespread clinical adoption. DVSTP addresses these challenges by computationally deconvoluting spatial data to enhance effective resolution and leveraging ubiquitously accessible H&amp;E-stained slides for molecular inference. This pragmatic approach democratizes access to spatial multi-omics and accelerates translational research.</p>
<p>Moreover, DVSTP’s capacity for reconstructing whole tumors in three dimensions transcends conventional two-dimensional histological analysis, enabling revelation of spatial infiltration patterns and molecular gradients invisible at planar sections. This comprehensive spatial insight holds promise for clinical applications ranging from pinpointing aggressive tumor regions prone to metastasis, to tailoring immunotherapeutic strategies based on localized immune landscapes, thus heralding a new era of precision oncology.</p>
<p>In sum, the Deep Visual Spatial Transcriptomics and Proteomics strategy presents a transformative platform to unravel the complex biological and spatial heterogeneity inherent in colorectal cancer. By fusing advanced computational tools with multi-omics data and traditional pathology, DVSTP paves the way for more nuanced tumor characterization, improved prognostic stratification, and ultimately, more effective and personalized cancer treatment paradigms.</p>
<hr />
<p><strong>Subject of Research</strong>: Integrative deep learning and spatial multi-omics analysis of intra-tumor heterogeneity in colorectal cancer</p>
<p><strong>Article Title</strong>: Deep Visual Spatial Transcriptomics and Proteomics strategy reveals intra-tumor heterogeneity</p>
<p><strong>News Publication Date</strong>: Not provided</p>
<p><strong>Web References</strong>: <a href="http://dx.doi.org/10.1016/j.scib.2026.04.047">http://dx.doi.org/10.1016/j.scib.2026.04.047</a></p>
<p><strong>References</strong>: Not provided</p>
<p><strong>Image Credits</strong>: ©Science Bulletin</p>
<p><strong>Keywords</strong>: colorectal cancer, intra-tumor heterogeneity, spatial transcriptomics, spatial proteomics, deep learning, computational pathology, tumor microenvironment, SRSF6, immune exclusion, 3D tumor reconstruction, precision oncology</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">163499</post-id>	</item>
		<item>
		<title>Fructose Metabolism Drives Colorectal Cancer Growth</title>
		<link>https://scienmag.com/fructose-metabolism-drives-colorectal-cancer-growth/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Thu, 16 Oct 2025 19:06:58 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[cancer metabolism research breakthroughs]]></category>
		<category><![CDATA[fructose metabolism and colorectal cancer]]></category>
		<category><![CDATA[fructose transporters in colorectal tumors]]></category>
		<category><![CDATA[glucose vs fructose in cancer]]></category>
		<category><![CDATA[metabolic pathways in cancer cells]]></category>
		<category><![CDATA[metabolomics in tumor biology]]></category>
		<category><![CDATA[novel cancer treatment strategies]]></category>
		<category><![CDATA[proteomics in cancer research]]></category>
		<category><![CDATA[role of fructose in tumor growth]]></category>
		<category><![CDATA[therapeutic interventions for colorectal cancer]]></category>
		<category><![CDATA[understanding colorectal cancer biology]]></category>
		<category><![CDATA[Warburg effect and cancer]]></category>
		<guid isPermaLink="false">https://scienmag.com/fructose-metabolism-drives-colorectal-cancer-growth/</guid>

					<description><![CDATA[In a groundbreaking study published in Cell Death Discovery, researchers have unveiled compelling evidence that colorectal cancer cells harness fructose metabolism as a critical component of their survival and proliferation strategies. This revelation marks a significant shift in the understanding of cancer metabolism, which has traditionally emphasized glucose as the primary fuel source for tumor [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In a groundbreaking study published in <em>Cell Death Discovery</em>, researchers have unveiled compelling evidence that colorectal cancer cells harness fructose metabolism as a critical component of their survival and proliferation strategies. This revelation marks a significant shift in the understanding of cancer metabolism, which has traditionally emphasized glucose as the primary fuel source for tumor growth. The implications not only deepen our comprehension of colorectal cancer biology but may also pave the way for novel therapeutic interventions.</p>
<p>The scientific inquiry, led by Sica et al., delves into the metabolic nuances that distinguish malignant colorectal cells from their normal counterparts. For decades, the Warburg effect—characterized by enhanced glucose uptake and fermentation to lactate even in the presence of oxygen—has been the cornerstone of cancer metabolism research. However, this latest investigation disrupts this paradigm by demonstrating that fructose, a simple sugar commonly found in the human diet, is extensively metabolized within colorectal tumor cells, suggesting an alternative or complementary bioenergetic pathway.</p>
<p>What makes this discovery particularly striking is the identification and quantification of key proteins and enzymes involved in fructose metabolism within tumor tissues. Using state-of-the-art proteomics and metabolomics techniques, the authors reported elevated expression of fructose transporters such as GLUT5 and key enzymes like ketohexokinase (KHK), which catalyzes the phosphorylation of fructose. These molecular insights underscore the metabolic flexibility of cancer cells, emphasizing how they adapt their nutrient uptake mechanisms to exploit available resources efficiently.</p>
<p>Functionally, the metabolism of fructose in these cells appears to fuel processes beyond mere ATP production. The research data show that fructose-derived metabolites feed into anabolic pathways, supporting nucleotide synthesis, lipid biosynthesis, and redox balance—cornerstones for rapidly dividing cancer cells. This multi-faceted utilization of fructose metabolics underscores the sugar&#8217;s role in sustaining the biosynthetic demands of colorectal tumors and maintaining cellular homeostasis under stress conditions like hypoxia or nutrient scarcity.</p>
<p>Remarkably, experimental models further confirmed the physiological relevance of these molecular observations. Xenograft mice implanted with colorectal cancer cells demonstrated increased tumor growth rates when fed diets enriched with fructose. Conversely, inhibition of fructose metabolism through pharmacological blockage of KHK led to substantial suppression of tumor progression, validating fructose metabolism as a potential therapeutic target.</p>
<p>Delving deeper into the mechanistic underpinnings, the study explored how fructose metabolism intersects with signaling pathways governing cell proliferation and apoptosis. It appears that fructose metabolism modulates key oncogenic pathways such as PI3K/Akt and mTOR, which are known regulators of cellular growth and survival. This intertwining of metabolic flux and signal transduction networks exemplifies the complexity of cancer biology and highlights potential vulnerabilities that could be exploited pharmaceutically.</p>
<p>At a broader level, this study challenges the conventional wisdom that primarily implicates glucose in the metabolic rewiring of cancer cells. The findings argue for a more inclusive model of cancer metabolism that integrates diverse nutrient sources. Since fructose consumption has increased dramatically in Western diets, especially through high-fructose corn syrup in processed foods, this research invites a reevaluation of dietary factors in colorectal cancer etiology and progression, potentially influencing public health policies.</p>
<p>The methodological rigor of the research is noteworthy. Combining in vitro assays, sophisticated metabolic tracing using isotopically labeled fructose, and in vivo models, the authors present a comprehensive and convincing case for fructose’s role in cancer metabolism. High-resolution mass spectrometry elucidated the fate of fructose carbons across metabolic pathways, providing an unprecedented mapping of metabolite fluxes within tumor cells.</p>
<p>Intriguingly, the study also uncovered heterogeneity within colorectal cancer subtypes in terms of their reliance on fructose metabolism. Some tumors exhibited a predilection for fructose uptake and processing, while others appeared more dependent on traditional glucose pathways. This heterogeneity suggests potential stratification markers for predicting the efficacy of metabolic-targeted therapies, moving towards more personalized oncology approaches.</p>
<p>The clinical implications of these findings extend to the development of diagnostic tools. Non-invasive imaging techniques that detect fructose uptake, analogous to PET scans used for glucose visualization, might emerge as novel modalities to identify aggressive tumors or monitor therapeutic response. Additionally, the expression levels of fructose metabolism-associated proteins could serve as prognostic biomarkers for colorectal cancer progression.</p>
<p>Importantly, this study also raises questions about the metabolic interplay between cancer cells and the tumor microenvironment. Since fructose availability and metabolism might influence not only cancer cells but also stromal components like fibroblasts and immune cells, understanding this crosstalk could unveil new dimensions of tumor biology and resistance mechanisms.</p>
<p>From a therapeutic standpoint, the study amplifies interest in developing inhibitors targeting fructose metabolic enzymes like KHK or fructose transporters such as GLUT5. Given the differential reliance of cancer versus normal cells on these pathways, selective targeting might minimize off-target effects, enhancing the safety profile of such interventions.</p>
<p>Moreover, the research underscores the potential synergy between metabolic inhibitors and conventional chemotherapeutic agents. By restricting critical nutrient pathways like fructose metabolism, cancer cells may become more vulnerable to existing treatments or immune-mediated destruction, offering a multi-pronged attack on tumor viability.</p>
<p>As the field moves forward, further investigations are warranted to validate these findings across larger patient cohorts and diverse populations. Longitudinal studies correlating dietary fructose intake with tumor fructose metabolism and clinical outcomes will be crucial to translate these molecular insights into meaningful patient care strategies.</p>
<p>In conclusion, the compelling evidence presented by Sica and colleagues heralds a paradigm shift in our understanding of colorectal cancer metabolism. The identification of fructose as a significant metabolic substrate challenges long-standing dogmas and opens promising avenues for research, diagnosis, and treatment. This discovery not only enriches the molecular landscape of cancer biology but also spotlights the intricate relationship between nutrition and malignancy, highlighting the complexity and adaptability of cancer cells in their relentless quest for survival.</p>
<hr />
<p><strong>Subject of Research</strong>: Colorectal cancer metabolism, specifically focusing on fructose metabolism in tumor cells.</p>
<p><strong>Article Title</strong>: Evidence of fructose metabolism in colorectal cancer.</p>
<p><strong>Article References</strong>:<br />
Sica, G.S., Bischof, J., Funke, L. <em>et al.</em> Evidence of fructose metabolism in colorectal cancer. <em>Cell Death Discov.</em> 11, 464 (2025). <a href="https://doi.org/10.1038/s41420-025-02745-w">https://doi.org/10.1038/s41420-025-02745-w</a></p>
<p><strong>Image Credits</strong>: AI Generated</p>
<p><strong>DOI</strong>: <a href="https://doi.org/10.1038/s41420-025-02745-w">https://doi.org/10.1038/s41420-025-02745-w</a></p>
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		<post-id xmlns="com-wordpress:feed-additions:1">92477</post-id>	</item>
		<item>
		<title>Mapping Proteins for Early Colorectal Cancer Detection</title>
		<link>https://scienmag.com/mapping-proteins-for-early-colorectal-cancer-detection/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Tue, 14 Oct 2025 10:11:09 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[advanced mass spectrometry techniques]]></category>
		<category><![CDATA[cancer progression molecular mechanisms]]></category>
		<category><![CDATA[colorectal cancer screening strategies]]></category>
		<category><![CDATA[early colorectal cancer detection]]></category>
		<category><![CDATA[enhancing clinical practices in oncology]]></category>
		<category><![CDATA[identifying precancerous lesions]]></category>
		<category><![CDATA[improving patient outcomes through diagnostics]]></category>
		<category><![CDATA[innovative early diagnosis methods]]></category>
		<category><![CDATA[protein biomarkers in cancer diagnosis]]></category>
		<category><![CDATA[proteomics in cancer research]]></category>
		<category><![CDATA[reliable biomarkers for cancer]]></category>
		<category><![CDATA[targeted proteomic analyses]]></category>
		<guid isPermaLink="false">https://scienmag.com/mapping-proteins-for-early-colorectal-cancer-detection/</guid>

					<description><![CDATA[In a groundbreaking study published in Clinical Proteomics, researchers led by Y. Luo, C. Xiao, and C. Zheng have unveiled a revolutionary approach to the early detection of colorectal precancerous lesions through an extensive investigation of the protein landscape. This meticulous research highlights the potential of protein biomarkers in diagnosing colorectal cancer at an earlier [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In a groundbreaking study published in <em>Clinical Proteomics</em>, researchers led by Y. Luo, C. Xiao, and C. Zheng have unveiled a revolutionary approach to the early detection of colorectal precancerous lesions through an extensive investigation of the protein landscape. This meticulous research highlights the potential of protein biomarkers in diagnosing colorectal cancer at an earlier stage, which is critical for improving patient outcomes. The study underscores the importance of proteomics in understanding the molecular underpinnings of cancer progression, opening up avenues for new diagnostic tools that could significantly enhance clinical practices.</p>
<p>Colorectal cancer remains one of the leading causes of cancer-related deaths globally, challenging healthcare systems and illustrating the need for effective screening strategies. Early diagnosis is paramount in changing the prognosis for patients; thus, identifying reliable biomarkers could substantially improve survival rates. This study highlights how targeted proteomic analyses can be harnessed to unveil specific proteins associated with the onset of precancerous lesions, providing clinicians with invaluable information to inform treatment decisions.</p>
<p>By employing advanced proteomic techniques, the research team systematically identified and profiled a myriad of proteins present in colorectal tissue samples. The study utilized state-of-the-art mass spectrometry, enabling researchers to detect and quantify protein expression levels accurately. By comparing samples from healthy individuals to those with precancerous lesions, the researchers could pinpoint differential protein expressions that correlate with the onset of colorectal cancer, thereby laying the groundwork for potential biomarkers.</p>
<p>Importantly, the work digs deep into biological pathways affected during the early stages of colorectal cancer. Identifying these pathways not only sheds light on the molecular mechanisms contributing to cancer progression but also reveals potential targets for therapeutic intervention. By understanding how specific proteins are altered in precancerous lesions, researchers can develop strategies to reverse or inhibit these changes, potentially preventing cancer development altogether.</p>
<p>The authors highlight several key proteins that emerged as important players in this context. These proteins, often involved in critical cellular processes like apoptosis, cellular proliferation, and immune response, present exciting opportunities for further investigation. Their modulation could be crucial for the progression from benign lesions to malignant tumors, marking a pivotal step in colorectal carcinogenesis that warrants attention.</p>
<p>Moreover, the researchers emphasize the need for validation studies to confirm the clinical utility of these protein biomarkers. While their initial findings are promising, robust clinical trials are essential to determine how well these proteins perform in real-world screening scenarios. The path from research to clinical application is long but necessary to ensure that any newly identified markers offer tangible benefits to patients.</p>
<p>In light of the expanding knowledge of proteomics, this research serves as a reminder of the complexities of cancer biology and the necessity for interdisciplinary approaches to tackle such burdensome diseases. It evokes conversations about the future of cancer diagnostics, suggesting that proteomics could be an integral part of personalized medicine strategies. Tailoring surveillance and treatment strategies based on an individual&#8217;s unique protein expression profiles offers a glimpse of a more sophisticated and effective approach to cancer care.</p>
<p>Additionally, the significance of such research extends beyond colorectal cancer. Insights gained from understanding the protein landscape in colorectal precancerous lesions might be extrapolated to other forms of cancer, encouraging integrative research efforts across various oncological fields. This cross-disciplinary collaboration is vital for advancing our understanding of cancer biology and improving diagnostic and therapeutic modalities.</p>
<p>The study by Luo et al. reinforces the idea that early detection is possible through biochemical markers, changing the narrative around colorectal cancer screening. With the integration of innovative technologies and a deeper understanding of biological processes, healthcare providers could soon execute more effective screening protocols, potentially saving lives and reducing the burden of late-stage cancer diagnoses.</p>
<p>In conclusion, this pioneering research sets the stage for future investigations focused on protein biomarkers in colorectal cancer. The potential for integrating these findings into clinical practice holds great promise, suggesting that the next decade could usher in a new era of cancer detection through molecular profiling. As researchers continue to unlock the mysteries of cancer biology through innovative approaches like proteomics, the hope for earlier and more accurate detection of colorectal precancerous lesions becomes increasingly attainable.</p>
<p>Strong advocacy for further studies and validation of these protein biomarkers is essential. The journey from bench to bedside is one fraught with challenges, yet the rewards—early detection, improved treatment options, and ultimately, better survival rates—are well worth the effort. This study highlights that while the science behind cancer diagnostics is evolving, the fundamental goal remains the same: to catch cancer before it poses a life-threatening risk to patients.</p>
<p>This groundbreaking work emphasizes the need for continued investment in research and technology to further enhance our understanding of colorectal cancer. By embracing this evolving proteomic landscape, we may be on the cusp of transformative advancements in cancer detection and treatment. The convergence of science, technology, and patient care could redefine how we approach one of the most common and consequential diseases of our time.</p>
<p>As these researchers continue their quest for knowledge, the broader scientific community and society must rally around this cause. Opportunities for change are not just theoretical; they present real possibilities aligned with the vital needs of public health. Moving forward, the emphasis must be placed not only on discovering new biomarkers but also on overcoming obstacles that may hinder their adoption into standard medical practice. The implications of success are profound, potentially leading to a paradigm shift in the fight against colorectal cancer.</p>
<p><strong>Subject of Research</strong>: Colorectal cancer detection through protein biomarkers.</p>
<p><strong>Article Title</strong>: Unveiling the protein landscape for early detection of colorectal precancerous lesions.</p>
<p><strong>Article References</strong>:</p>
<p class="c-bibliographic-information__citation">Luo, Y., Xiao, C., Zheng, C. <i>et al.</i> Unveiling the protein landscape for early detection of colorectal precancerous lesions. <i>Clin Proteom</i> <b>22</b>, 27 (2025). https://doi.org/10.1186/s12014-025-09552-6</p>
<p><strong>Image Credits</strong>: AI Generated</p>
<p><strong>DOI</strong>:</p>
<p><strong>Keywords</strong>: Colorectal cancer, proteomics, biomarkers, early detection, precancerous lesions.</p>
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