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	<title>immune response biomarkers &#8211; Science</title>
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	<title>immune response biomarkers &#8211; Science</title>
	<link>https://scienmag.com</link>
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		<title>Immune-toxicity model and efficacy biomarkers enable precise NSCLC immunotherapy stratification</title>
		<link>https://scienmag.com/immune-toxicity-model-and-efficacy-biomarkers-enable-precise-nsclc-immunotherapy-stratification/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Wed, 26 Aug 2026 17:42:28 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[anti-PD-1 sintilimab]]></category>
		<category><![CDATA[immune checkpoint inhibitor stratification]]></category>
		<category><![CDATA[immune response biomarkers]]></category>
		<category><![CDATA[immune toxicity prediction]]></category>
		<category><![CDATA[immune-related adverse event risk assessment]]></category>
		<category><![CDATA[lung cancer immunotherapy]]></category>
		<category><![CDATA[NSCLC immune-related adverse events]]></category>
		<category><![CDATA[PD-L1 expression biomarkers]]></category>
		<category><![CDATA[personalized cancer immunotherapy]]></category>
		<category><![CDATA[phase 3 ORIENT-11 trial]]></category>
		<category><![CDATA[T helper 17 cell gene-expression signature]]></category>
		<category><![CDATA[tumor-infiltrating lymphocytes]]></category>
		<guid isPermaLink="false">https://scienmag.com/immune-toxicity-model-and-efficacy-biomarkers-enable-precise-nsclc-immunotherapy-stratification/</guid>

					<description><![CDATA[A new analysis of the phase 3 ORIENT-11 trial suggests that the future of lung-cancer immunotherapy may depend not only on identifying patients most likely to respond, but also on predicting who could suffer dangerous immune complications. Researchers from Sun Yat-Sen University Cancer Center report that a gene-expression signature associated with T helper 17, or [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>A new analysis of the phase 3 ORIENT-11 trial suggests that the future of lung-cancer immunotherapy may depend not only on identifying patients most likely to respond, but also on predicting who could suffer dangerous immune complications. Researchers from Sun Yat-Sen University Cancer Center report that a gene-expression signature associated with T helper 17, or Th17, cell differentiation can help estimate the risk of severe immune-related adverse events in people with advanced non-small cell lung cancer receiving the anti-PD-1 antibody sintilimab together with chemotherapy. When this toxicity signal was combined with established measures of treatment benefit—PD-L1 expression and tumor-infiltrating lymphocytes—the investigators created a four-quadrant system that separated patients according to both expected efficacy and potential harm. The results, published in <em>Cancer Immunology, Immunotherapy</em>, point toward a more individualized approach to immune checkpoint therapy, a treatment strategy that has transformed oncology but remains difficult to tailor before therapy begins.</p>
<p>Immune checkpoint inhibitors work by releasing molecular brakes that restrain T cells. In cancer, proteins such as PD-1 on immune cells and PD-L1 on tumor or surrounding cells can suppress an antitumor response, allowing malignant cells to evade immune surveillance. Blocking PD-1 with an antibody such as sintilimab can restore T-cell activity and produce durable tumor control. The same immune activation, however, can sometimes turn against healthy organs. These complications, known as immune-related adverse events, may affect the skin, colon, liver, lungs, endocrine glands, heart, nervous system, or other tissues. Although many are manageable, severe events can require hospitalization, high-dose corticosteroids or other immunosuppressive treatments, interruption of cancer therapy, and, in rare cases, can be fatal. Clinicians therefore face a central dilemma: the immune profile that supports tumor rejection may also increase the risk of uncontrolled inflammation.</p>
<p>The ORIENT-11 analysis focused on 266 patients with advanced NSCLC who received sintilimab plus chemotherapy. Within this group, 19 patients, or 7.14 percent, developed severe immune-related adverse events. Because these events were relatively uncommon, the researchers used baseline tumor RNA-sequencing data to search for biological pathways that distinguished affected patients from those who did not experience severe toxicity. RNA sequencing measures the abundance of thousands of RNA molecules in a tissue sample, offering a molecular snapshot of the genes and cellular programs active inside the tumor microenvironment. The team applied gene set enrichment analysis and other pathway-based methods rather than examining isolated genes alone. This approach is designed to identify coordinated biological processes, which can be more robust than relying on a single molecular marker whose level may vary between laboratories or tumor samples.</p>
<p>The strongest signal was the Th17 cell differentiation pathway. Th17 cells are a subset of CD4-positive T cells that produce inflammatory cytokines, including interleukin-17, and help coordinate immune responses at mucosal barriers. They are important in protection against certain pathogens, but excessive or misdirected Th17 activity has also been linked to autoimmune and inflammatory diseases. The enrichment observed in the tumors of patients who later developed severe irAEs does not prove that Th17 cells directly cause treatment toxicity. It does, however, suggest that a pre-existing inflammatory immune state may identify patients whose immune systems are more likely to become pathologically activated after checkpoint blockade. The finding also offers a plausible biological bridge between local immune activity in the tumor and systemic toxicities that emerge in organs far from the original cancer.</p>
<p>To convert this biological observation into a clinically usable tool, the investigators developed a predictive model from genes within the enriched pathway. They used repeated least absolute shrinkage and selection operator, or LASSO, regression 50 times. LASSO is a statistical technique that reduces the influence of redundant variables and selects a smaller group of features, an important safeguard when molecular datasets contain many genes but relatively few clinical events. The repeated analyses were intended to identify a stable gene combination rather than a signature dependent on one random division of the data. The resulting model achieved an area under the receiver operating characteristic curve of 0.904 in the training cohort and 0.769 in the validation cohort. An AUC of 0.5 represents chance discrimination, whereas a value of 1.0 indicates perfect separation, placing the model’s performance between strong and moderate depending on the dataset used.</p>
<p>The researchers then asked whether toxicity prediction could be integrated with markers of antitumor benefit. PD-L1 expression is already used in many NSCLC treatment decisions because it can reflect the likelihood of response to PD-1 or PD-L1 blockade, although its predictive accuracy is imperfect. Tumor-infiltrating lymphocytes provide a complementary view of the immune contexture: rather than measuring a tumor’s ability to display an immune target, TIL assessment considers whether immune cells are already present within or around the cancer. By combining PD-L1 and TIL-defined efficacy categories with the Th17-based severe-irAE score, the team assigned patients to four risk–benefit groups. This framework was designed to distinguish patients with a favorable likelihood of response and low toxicity risk from those who might have a less attractive therapeutic balance.</p>
<p>The differences between the resulting groups were substantial. Reported objective response rates ranged from 92.9 percent in the most favorable category to 51.1 percent in another group. Severe irAE incidence ranged from zero to 46.7 percent, indicating that some molecularly defined subsets appeared to carry a markedly higher risk of serious immune complications. The groups also differed in progression-free survival, the interval before cancer progression or death, although the abstract does not provide the exact survival estimates. These findings are important because efficacy and toxicity were not treated as opposite ends of a single scale. Instead, the model suggested that the biological factors associated with tumor response and those associated with severe immune injury may be at least partly independent. A patient could therefore have a strong predicted response but also a high toxicity risk, or a lower predicted benefit without an obviously elevated risk of severe irAEs.</p>
<p>The concept could eventually reshape how oncologists discuss immunotherapy with patients. A person in a high-benefit, low-risk group might be an especially strong candidate for treatment, while someone in a high-risk, lower-benefit group could require a more cautious evaluation of alternatives, intensified monitoring, or a different therapeutic strategy. The model might also help researchers design clinical trials that prospectively test toxicity-prevention measures, including closer surveillance for early organ inflammation. However, the findings are not yet a validated diagnostic test. This was a post hoc analysis of a single randomized trial, and the model was developed from patients treated with one specific immunotherapy-plus-chemotherapy regimen. Severe irAEs were observed in only 19 patients, a small number for training a multigene predictor, and performance declined from the training cohort to the validation cohort. External validation in independent populations is essential before the score can guide routine care.</p>
<p>Several additional challenges must also be addressed before a Th17-based model could move from research into hospitals. Tumor RNA sequencing requires adequate tissue, standardized laboratory procedures, computational analysis, and a clinically defined threshold for a positive or high-risk result. Tumors are heterogeneous, meaning that a small biopsy may not represent the entire cancer or its changing immune environment. Th17-related activity could also vary with previous treatments, infections, medications, microbiome composition, and the organ-specific mechanisms of individual irAEs. Moreover, the analysis combined severe immune toxicities as a broad outcome, even though pneumonitis, colitis, hepatitis, myocarditis, and endocrine events may arise through different biological pathways. Future studies will need to determine whether the signature predicts severe irAEs generally or is particularly informative for specific organs and syndromes.</p>
<p>Despite these limitations, the ORIENT-11 study illustrates a wider shift in cancer medicine: predictive biomarkers are beginning to incorporate treatment risk as well as treatment benefit. For years, immunotherapy selection has focused primarily on whether a tumor appears vulnerable to immune attack. The new analysis argues that the patient’s capacity for harmful immune activation deserves equal attention. Its Th17-associated signal is not a final answer, but it provides a mechanistic hypothesis and a measurable framework for testing it. If confirmed in larger, prospective and ethnically diverse cohorts, the approach could help replace one-size-fits-all checkpoint blockade with a more precise risk–benefit strategy—one that seeks not merely to activate the immune system, but to activate it where it is most likely to help and least likely to cause lasting harm.</p>
<p><strong>Subject of Research</strong>: Severe immune-related adverse-event prediction and efficacy–toxicity stratification in advanced non-small cell lung cancer immunotherapy</p>
<p><strong>Article Title</strong>: Integration of a severe immune-related adverse events predictive model with efficacy biomarkers enables precise stratification in NSCLC immunotherapy: insights from the phase 3 ORIENT-11 study</p>
<p><strong>Article References</strong>: Peng Y, Wen L, Shen J, et al. <em>Cancer Immunology, Immunotherapy</em>. 2026. Springer Nature.</p>
<p><strong>Image Credits</strong>: AI Generated</p>
<p><strong>DOI</strong>: 10.1007/s00262-026-04511-y</p>
<p><strong>Keywords</strong>: Severe immune-related adverse events; non-small cell lung cancer; Th17 differentiation pathway; sintilimab; immune checkpoint inhibitors; PD-L1; tumor-infiltrating lymphocytes; predictive model; risk–benefit stratification</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">182336</post-id>	</item>
		<item>
		<title>Type I Interferon Signature Enables Early Bacterial Infection Diagnosis</title>
		<link>https://scienmag.com/type-i-interferon-signature-enables-early-bacterial-infection-diagnosis/</link>
		
		<dc:creator><![CDATA[Kristina Jarvis]]></dc:creator>
		<pubDate>Thu, 09 Oct 2025 15:58:04 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[challenges in infant fever diagnosis]]></category>
		<category><![CDATA[distinguishing viral and bacterial infections]]></category>
		<category><![CDATA[early diagnosis of bacterial infections]]></category>
		<category><![CDATA[febrile infants diagnosis]]></category>
		<category><![CDATA[immune response biomarkers]]></category>
		<category><![CDATA[novel diagnostic tools for infections]]></category>
		<category><![CDATA[overcoming diagnostic limitations in infants]]></category>
		<category><![CDATA[pediatric infection management]]></category>
		<category><![CDATA[precision medicine in infectious diseases]]></category>
		<category><![CDATA[serious bacterial infections in infants]]></category>
		<category><![CDATA[transcriptomic analysis in medicine]]></category>
		<category><![CDATA[Type I interferon signature]]></category>
		<guid isPermaLink="false">https://scienmag.com/type-i-interferon-signature-enables-early-bacterial-infection-diagnosis/</guid>

					<description><![CDATA[In recent years, the challenge of diagnosing serious bacterial infections (SBIs) in febrile infants has posed a formidable obstacle for clinicians worldwide. Infants presenting with fever represent a precarious demographic due to their immature immune systems, which complicates early disease detection and timely intervention. The traditional diagnostic modalities often fall short, frequently resulting in either [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In recent years, the challenge of diagnosing serious bacterial infections (SBIs) in febrile infants has posed a formidable obstacle for clinicians worldwide. Infants presenting with fever represent a precarious demographic due to their immature immune systems, which complicates early disease detection and timely intervention. The traditional diagnostic modalities often fall short, frequently resulting in either delayed treatment or unnecessary antibiotic administration. However, the emerging study by Fueri, Bellini, and colleagues, on which Stansfield, Craig, and Nold provide a comprehensive commentary, promises to revolutionize early diagnosis in this vulnerable population by exploiting a novel biomarker: the type I interferon signature.</p>
<p>The potential of the type I interferon (IFN-I) signaling pathway as a diagnostic tool has recently captured significant scientific interest. Unlike conventional biomarkers such as C-reactive protein or procalcitonin, which lack specificity and sensitivity in early infection stages, the IFN-I signature embodies a dynamic indicator of the host’s immune response. Type I interferons orchestrate antiviral defense mechanisms but also modulate bacterial responses, positioning their expression profile as an insightful window into the infection&#8217;s etiology. Fueri and Bellini’s breakthrough lies in harnessing this molecular fingerprint to discriminate serious bacterial infections from viral illnesses or non-infectious causes of fever.</p>
<p>This pioneering approach leverages advanced transcriptomic technologies, enabling the detection of subtle changes in gene expression patterns within peripheral blood samples of febrile infants. Using high-throughput sequencing and machine learning algorithms, the authors have delineated a distinct IFN-I gene set that reliably signals the presence of severe bacterial invasion. This molecular signature not only allows for rapid diagnosis but also holds the potential to minimize the administration of broad-spectrum antibiotics, thus mitigating antibiotic resistance — a growing global health threat.</p>
<p>The commentary by Stansfield et al. meticulously reviews and contextualizes these findings, highlighting the translational significance of the IFN-I signature in clinical settings. They emphasize that early and accurate identification of SBIs is paramount, especially in infants under 60 days of age, where invasive bacterial infections can escalate swiftly, leading to severe morbidity or mortality. Traditional culture-based diagnostics are time-consuming and often yield false negatives due to prior antibiotic exposure or low bacterial loads. Therefore, the IFN-I based assay provides a non-invasive, rapid, and highly sensitive alternative that could reshape infant fever management protocols.</p>
<p>Moreover, the biological underpinnings governing the IFN-I response in bacterial infections elucidate a nuanced interplay between immune signaling cascades and pathogen recognition. The interferon response involves a complex network of pattern recognition receptors (PRRs), including Toll-like receptors (TLRs) and cytosolic sensors, which detect pathogen-associated molecular patterns (PAMPs). Activation of these receptors initiates downstream transcription factors such as IRF3 and IRF7, culminating in the expression of IFN-I cytokines and interferon-stimulated genes (ISGs). The selective elevation of ISGs in bacterial versus viral infections forms the crux of the diagnostic signature employed by Fueri&#8217;s team.</p>
<p>Notably, the study also underscores the heterogeneity of host immune responses, acknowledging that genetic and environmental factors influence IFN-I expression profiles. This variability necessitates robust computational models capable of integrating multi-dimensional data to discern pathological signals from background immunological noise. The application of artificial intelligence and machine learning techniques in refining and validating the IFN-I signature exemplifies the merger of biomedical sciences and data analytics, heralding a new era in personalized medicine for infectious diseases.</p>
<p>The clinical implications of implementing IFN-I based diagnostics are broad and profound. Early differentiation between bacterial and viral infections could markedly reduce unnecessary hospital admissions, empirical antibiotic use, and associated healthcare costs. Furthermore, this approach promises to improve antibiotic stewardship significantly, reducing the selection pressures that drive the emergence of resistant strains. In resource-limited settings, where conventional diagnostics are often unavailable, portable platforms harnessing this molecular signature could transform pediatric care delivery.</p>
<p>Nevertheless, the commentary articulates certain limitations and challenges that need addressing before widespread clinical adoption. One critical concern is the need for standardization across different laboratory platforms to ensure reproducibility and accuracy. Additionally, longitudinal studies tracking IFN-I signature dynamics throughout infection courses are needed to refine timing parameters for optimal diagnostic sensitivity. Ethical considerations regarding data privacy and integration into existing clinical workflows also require careful planning.</p>
<p>Furthermore, the article stresses that while the IFN-I signature offers significant specificity for SBIs, it does not function in isolation. Combining this biomarker with clinical parameters and other laboratory tests in multimodal diagnostic algorithms could enhance overall predictive power. The integration of biomarkers into clinician decision-support systems embodies a multidisciplinary effort requiring collaboration between immunologists, infectious disease specialists, bioinformaticians, and healthcare providers.</p>
<p>The research also invites reflection on the broader implications of harnessing host immune responses as diagnostic tools. Beyond pediatrics, the IFN-I signature framework may have applications in immunocompromised populations or in distinguishing complex sepsis etiologies in adults. This aligns with a growing trend towards precision diagnostics, where subtle immunological cues replace generalized symptom-based assessments, accelerating targeted therapeutic interventions.</p>
<p>Stansfield, Craig, and Nold&#8217;s commentary further illuminates the exciting prospect of integrating emerging molecular diagnostics into neonatal intensive care units (NICUs). Within these environments, where rapid clinical decisions are imperative, the IFN-I signature assay could facilitate swift risk stratification, triaging infants for immediate treatment or close monitoring. This advancement dovetails harmoniously with ongoing efforts to reduce invasive procedures, such as lumbar punctures, by providing non-invasive, clinically actionable insights.</p>
<p>The evolution of molecular diagnostics like the IFN-I signature heightens the imperative for training healthcare personnel in interpreting these test results accurately and integrating them within broader clinical contexts. Educational initiatives will be indispensable to bridge the gap between bench research and bedside application. Additionally, ongoing dialogue with regulatory bodies will be essential to navigate approval pathways and ensure quality assurance.</p>
<p>As the healthcare landscape continues to embrace technological innovation, the synergistic coupling of immunology and computational biology promises to redefine infectious disease diagnostics fundamentally. The IFN-I signature represents a quintessential example of this paradigm shift, transforming the feverish infant’s clinical challenge into an opportunity for precise, timely, and effective interventions. The commentary underlines that sustained investment in this area is vital to realize the full potential of such transformative diagnostics.</p>
<p>Finally, the broader public health ramifications extend beyond improved patient outcomes. Enhanced early detection of SBIs in infants may contribute to lowering hospitalization rates, reducing the burden on healthcare systems, and diminishing the societal costs associated with antibiotic resistance and infectious diseases. As this promising biomarker-driven approach moves toward clinical translation, it signals a future where infectious disease diagnostics are faster, smarter, and inherently personalized, meeting the pressing needs of the most vulnerable patients with unprecedented accuracy.</p>
<hr />
<p><strong>Subject of Research</strong>: Early diagnosis of serious bacterial infection in febrile infants using the type I interferon signature.</p>
<p><strong>Article Title</strong>: Commentary on ‘Early diagnosis of serious bacterial infection in febrile infants using type I interferon signature’ by Fueri, Bellini and group.</p>
<p><strong>Article References</strong>: Stansfield, S.H., Craig, S.S. &amp; Nold, M.F. Commentary on ‘Early diagnosis of serious bacterial infection in febrile infants using type I interferon signature’ by Fueri, Bellini and group. <em>Pediatr Res</em> (2025). <a href="https://doi.org/10.1038/s41390-025-04474-3">https://doi.org/10.1038/s41390-025-04474-3</a></p>
<p><strong>Image Credits</strong>: AI Generated</p>
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