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	<title>DNA binding &#8211; Science</title>
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	<title>DNA binding &#8211; Science</title>
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		<title>Ligand Geometry Steers How Platinum Anticancer Candidates Grip DNA</title>
		<link>https://scienmag.com/ligand-geometry-steers-how-platinum-anticancer-candidates-grip-dna/</link>
		
		<dc:creator><![CDATA[Bethany Barker]]></dc:creator>
		<pubDate>Sat, 10 Oct 2026 16:55:35 +0000</pubDate>
				<category><![CDATA[Chemistry]]></category>
		<category><![CDATA[A549]]></category>
		<category><![CDATA[bioinorganic chemistry of platinum drugs]]></category>
		<category><![CDATA[bisphosphine]]></category>
		<category><![CDATA[cisplatin]]></category>
		<category><![CDATA[cisplatin toxicity and resistance]]></category>
		<category><![CDATA[cyclometalated ligands]]></category>
		<category><![CDATA[cyclometalated platinum(II) complexes]]></category>
		<category><![CDATA[cytotoxicity]]></category>
		<category><![CDATA[design of selective anticancer agents]]></category>
		<category><![CDATA[DNA binding]]></category>
		<category><![CDATA[DNA binding mechanisms]]></category>
		<category><![CDATA[DNA targeting by platinum complexes]]></category>
		<category><![CDATA[groove binding]]></category>
		<category><![CDATA[influence of ligand geometry on cytotoxicity]]></category>
		<category><![CDATA[intercalation]]></category>
		<category><![CDATA[ligand architecture in medicinal chemistry]]></category>
		<category><![CDATA[ligand chelation and bridging effects]]></category>
		<category><![CDATA[MCF-7]]></category>
		<category><![CDATA[medicinal inorganic chemistry]]></category>
		<category><![CDATA[molecular docking]]></category>
		<category><![CDATA[phosphine ligand influence on drug activity]]></category>
		<category><![CDATA[Platinum anticancer drugs]]></category>
		<category><![CDATA[platinum(II) complexes]]></category>
		<category><![CDATA[structure-activity relationship in inorganic drugs]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=259334</guid>

					<description><![CDATA[A new study shows that changing how diphosphine ligands coordinate to cyclometalated platinum(II) complexes switches their DNA-binding mode from attempted intercalation to groove binding and reshapes their cytotoxicity against breast and lung cancer cells.]]></description>
										<content:encoded><![CDATA[<p>More than four decades after cisplatin transformed the treatment of testicular, ovarian, and head and neck cancers, chemists are still wrestling with the same fundamental problem: the drug that saved millions of lives also carries punishing toxicity and breeds resistance. A research team reporting in Results in Chemistry has now dissected how subtle changes in the architecture of cyclometalated platinum(II) complexes—specifically, whether a diphosphine ligand chelates a single platinum center or bridges two of them—alter the way these molecules engage DNA and kill tumor cells. The findings offer a textbook example of structure-activity relationships in medicinal inorganic chemistry, where swapping one ligand for a close cousin can flip both the DNA-binding mode and the cytotoxic profile.</p>
<p>The team, led by Fatemeh Masoumi and Mohsen Golbon Haghighi, synthesized four platinum(II) complexes built around two classic cyclometalating frameworks: 2-phenylpyridinate (ppy) and benzo[h]quinolinate (bhq). These C^N ligands bind platinum through a strong platinum–carbon sigma bond, a feature thought to enhance the stability and biological activity of cycloplatinated drugs. To this core the researchers added either bis(diphenylphosphino)methane (dppm) or bis(diphenylphosphino)amine (dppa). In the mononuclear complexes C1 and C2, the diphosphine chelates one platinum atom, leaving a cationic species with a non-coordinated counterion. In the binuclear complexes D1 and D2, the same diphosphines instead act as bridges between two platinum centers, each carrying a chloride ligand. The result is a matched set of molecules in which coordination mode, aromatic surface area, and steric bulk can be varied almost independently.</p>
<p>DNA remains the canonical pharmacological target for platinum anticancer agents, so the first question was how each complex associates with calf thymus DNA. Transition metal complexes can bind DNA covalently, by displacing a labile ligand with a DNA nitrogen base such as guanine N7, or non-covalently, through intercalation between base pairs, electrostatic attraction to the anionic phosphate backbone, or minor- and major-groove binding. Ultraviolet–visible absorption titrations at pH 7.4 provided the first clues. As DNA was added, the absorption bands of C1, C2, and D1 showed hypochromism—a decrease in intensity often associated with intercalative stacking between aromatic chromophores and nucleobases—while D2 displayed hyperchromism, pointing to a weaker, non-intercalative association. Intrinsic binding constants derived from Benesi–Hildebrand analysis ranged from 1.07 × 10^4 M^-1 for C1 to 1.60 × 10^5 M^-1 for C2, placing the strongest complexes in the moderate-to-strong range but still orders of magnitude below classical intercalators such as ethidium bromide.</p>
<p>Because absorption spectroscopy alone cannot definitively assign a binding mode, the team turned to competitive fluorescence assays with two well-characterized probes. Ethidium bromide fluoresces strongly only when intercalated into duplex DNA, so a molecule that quenches the EB–DNA emission may itself be an intercalator. Hoechst 33258, by contrast, binds with high affinity to the minor groove of AT-rich sequences. All four complexes quenched the EB–DNA fluorescence in an incomplete manner—only about 15 percent displacement—suggesting that the platinum compounds occupy low-affinity sites rather than performing deep intercalation. Stern–Volmer constants followed the order D1 &gt; C2 &gt; C1 &gt; D2. The Hoechst displacement assays produced a different ranking, D2 &gt; C1 &gt; D1 &gt; C2, and slightly larger quenching constants overall, indicating that groove perturbation is the more responsive endpoint. Taken together, the two assays pointed toward a mixed binding picture in which minor-groove association dominates over intercalation.</p>
<p>Viscosity measurements delivered the most decisive verdict. Classical intercalation lengthens the DNA helix as base pairs are pried apart to admit the ligand, producing a pronounced rise in solution viscosity; ethidium bromide, the benchmark, generates a slope of roughly 1.4 in these experiments. The platinum complexes produced slopes of only 0.009 to 0.010—essentially negligible. Since groove binding bends or kinks the helix without materially changing its effective length, the near-flat viscosity profiles effectively rule out classical intercalation as the dominant interaction. The authors emphasize that hydrodynamic data of this kind must be read alongside spectroscopic results, but in this case the convergence was clear: these are groove-binding, electrostatically driven associates, not base-pair inserters.</p>
<p>Molecular docking with AutoDock4.2 against a rigid B-DNA dodecamer (PDB ID: 5BNA) added a structural rationale. The optimized geometries of all four complexes, computed at the B3LYP level with the LanL2DZ basis set for platinum, were docked using the Lamarckian Genetic Algorithm. Estimated binding free energies ranged from −6.53 to −7.68 kcal/mol, all favorable, with the mononuclear complexes C1 and C2 tying for the strongest scores. In the lowest-energy poses, the flat cyclometalated ppy and bhq groups orient toward the DNA and sit within the major groove, while the bulky diphosphine moieties—each bearing four phenyl rings—remain far from the base-pair gap, physically preventing deep insertion. For C1, the docking model resolved specific contacts: π–π stacking with the aromatic faces of DG4, DT20, and DA5 at distances of 4.39 to 5.98 Å, hydrogen bonds to DA17 and DA18 at 2.32 to 2.98 Å, and electrostatic and hydrophobic contacts at 3.18 and 4.39 Å. The binuclear complexes showed reduced steric hindrance, attributed to the opening of the chelating ring when the diphosphine bridges two metals.</p>
<p>The cytotoxicity data, obtained by MTT assay after 24 hours of exposure, revealed striking cell-line dependence. Against MCF-7 breast adenocarcinoma cells, the mononuclear complexes C1 and C2 were the clear winners, with IC50 values of 329.0 and 328.6 μM respectively—both more potent than cisplatin, which required 833.2 μM under the same conditions. Against A549 non-small cell lung carcinoma cells, the picture inverted: C2 led with an IC50 of 164.3 μM, followed by D2 at 207.1 μM, and notably D2 outperformed cisplatin roughly four-fold at the highest tested concentrations, while cisplatin itself was weakest at 833.2 μM. The binuclear D1 was the least active compound against both cancer lines. On the non-cancerous mouse fibroblast line L929, all complexes were toxic in a dose-dependent manner, and selectivity index calculations revealed values near or below one for most compounds—meaning little preferential killing of cancer cells over healthy ones, a weakness the authors acknowledge candidly.</p>
<p>Statistical analysis using one-way ANOVA with Tukey&#8217;s multiple comparison tests confirmed significant, dose-dependent viability reductions across all three cell lines (p &lt; 0.05), with the magnitude of response shaped by both the identity of the complex and the cell type. The structure–activity relationships that emerge are consistent across the biophysical and biological datasets: the larger, more planar aromatic surface of bhq relative to ppy favors DNA association through π-stacking, while the steric bulk and coordination mode of the diphosphine dictate whether deep intercalation is geometrically possible at all. C2, bearing the dppa ligand in a chelating mononuclear configuration, emerged as the most interesting candidate, combining the strongest DNA binding, the highest cytotoxicity against both cancer lines, and the best solution stability, retaining more than 93 percent of its absorbance after 24 hours in phosphate-buffered saline.</p>
<p>What makes this study notable is its methodological honesty. The authors explicitly caution that UV-derived binding constants can overestimate affinity because ethidium bromide itself participates in multiple binding equilibria, and that small spectral perturbations are supportive rather than definitive evidence of intercalation. By triangulating absorption spectroscopy, dual-probe fluorescence quenching, viscosity, and docking, they build a plausible rather than proclaimed model: accessible groove binding and electrostatic attraction to the phosphate backbone dominate, with possible hydrogen bonding from the amine-bearing dppa ligand to adenine nitrogen or thymine oxygen atoms adding stability. The work also underscores how much remains unknown—future experiments with Annexin V/PI assays, caspase activity measurements, reactive oxygen species detection, and cell-cycle analysis will be needed to pin down the actual death mechanism. For now, the message for drug designers is precise: in cyclometalated platinum chemistry, the shape of the ligand is not a detail. It is the switch that determines whether a molecule slides between base pairs, hugs the groove, or kills the tumor at all.</p>
<p><strong>Subject of Research:</strong> DNA interaction and cytotoxicity of cyclometalated platinum(II) complexes with chelating versus bridging bisphosphine ligands</p>
<p><strong>Article Title:</strong> Influence of ligand coordination mode on DNA interaction and cytotoxic investigations of cyclometalated platinum(II) complexes with bisphosphine ligands</p>
<p><strong>Article References:</strong> Masoumi, F., Haghighi, M. G., Noroozicharandabi, V., Kiadehi, S. R. B., &amp; Tayefeh, A. R. (2026). Influence of ligand coordination mode on DNA interaction and cytotoxic investigations of cyclometalated platinum(II) complexes with bisphosphine ligands. <em>Results in Chemistry, 31</em>, Article 103914. <a href="https://doi.org/10.1016/j.rechem.2026.103914" rel="noopener noreferrer">https://doi.org/10.1016/j.rechem.2026.103914</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> Not provided</p>
<p><strong>Keywords:</strong> platinum(II) complexes, cyclometalated ligands, bisphosphine, DNA binding, intercalation, groove binding, molecular docking, cytotoxicity, cisplatin, MCF-7, A549, medicinal inorganic chemistry</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">259334</post-id>	</item>
		<item>
		<title>Zinc Complexes Emerge as Safer Rivals to Platinum Cancer Drugs, Landmark Review Finds</title>
		<link>https://scienmag.com/zinc-complexes-emerge-as-safer-rivals-to-platinum-cancer-drugs-landmark-review-finds/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Wed, 07 Oct 2026 11:12:31 +0000</pubDate>
				<category><![CDATA[Chemistry]]></category>
		<category><![CDATA[advantages of zinc over platinum]]></category>
		<category><![CDATA[anticancer]]></category>
		<category><![CDATA[cisplatin resistance]]></category>
		<category><![CDATA[coordination chemistry]]></category>
		<category><![CDATA[development of non-toxic cancer drugs]]></category>
		<category><![CDATA[DNA binding]]></category>
		<category><![CDATA[drug design]]></category>
		<category><![CDATA[infrared spectroscopy]]></category>
		<category><![CDATA[limitations of platinum chemotherapy]]></category>
		<category><![CDATA[MCF-7]]></category>
		<category><![CDATA[metal-based cancer drugs]]></category>
		<category><![CDATA[metallodrugs]]></category>
		<category><![CDATA[metalloproteins and transcription factors]]></category>
		<category><![CDATA[molecular docking]]></category>
		<category><![CDATA[overcoming drug resistance in cancer]]></category>
		<category><![CDATA[redox-inert metal ions in medicine]]></category>
		<category><![CDATA[role of zinc in human biology]]></category>
		<category><![CDATA[safer alternatives to platinum chemotherapy]]></category>
		<category><![CDATA[Schiff base]]></category>
		<category><![CDATA[side effects of platinum-based chemotherapy]]></category>
		<category><![CDATA[Structure-activity relationships]]></category>
		<category><![CDATA[zinc complexes]]></category>
		<category><![CDATA[zinc complexes in cancer treatment]]></category>
		<category><![CDATA[zinc-based cancer therapeutics]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=244205</guid>

					<description><![CDATA[A systematic review of 66 zinc(II) Schiff base complexes shows that octahedral geometry and red-shifted imine infrared signatures predict potent, targeted anticancer activity, positioning zinc as a safer alternative to platinum chemotherapy.]]></description>
										<content:encoded><![CDATA[<p>For nearly half a century, the backbone of metal-based cancer chemotherapy has been platinum. Cisplatin and its successors carboplatin and oxaliplatin kill tumor cells by latching onto nuclear DNA and forming rigid cross-links that stall transcription and trigger apoptosis. Yet their clinical value is increasingly undermined by dose-limiting kidney damage, irreversible nerve injury, hearing loss, and the relentless rise of multidrug resistance. Now a sweeping review published in Discover Chemistry by A Arishifa Meeral and Arockiasamy Sebastian of Vellore Institute of Technology in Chennai offers one of the most detailed roadmaps yet for replacing platinum with something far gentler to the human body: zinc.</p>
<p>The appeal of zinc is rooted in basic human biology. It is the second most abundant essential trace element in our physiology, embedded in the catalytic and structural cores of more than 300 metalloenzymes and transcription factors. Unlike open-shell ions such as copper(II) or iron(III), zinc&#8217;s closed-shell d10 electronic configuration makes it entirely redox-innocent under physiological conditions. That means it cannot generate destructive hydroxyl radicals through Fenton-type chemistry, sparing healthy tissue from the off-target oxidative degradation that plagues many heavy-metal drugs. Just as importantly, the d10 state carries no ligand field stabilization energy, giving zinc complexes an unusual structural plasticity: the metal readily shifts between coordination numbers four, five, and six, adapting its shape on arrival at intracellular targets.</p>
<p>To harness this flexibility, chemists pair zinc with Schiff base ligands, the so-called privileged scaffolds of coordination chemistry, built by condensing primary amines with carbonyl compounds to create a tunable imine linkage. According to Tweedy&#8217;s chelation theory, coordination delocalizes the positive charge of the zinc ion across the entire conjugated chelate ring, reducing the metal&#8217;s surface polarity and boosting the complex&#8217;s lipophilicity. By adjusting the electronic and steric profiles of peripheral aromatic substituents, researchers can engineer these frameworks to slip passively through the lipid-rich membranes of tumor cells while resisting premature dissociation in the bloodstream.</p>
<p>The new review is not a casual survey. Following a PRISMA-inspired workflow, the authors searched Scopus, Web of Science, and SciFinder for peer-reviewed studies published between 2015 and 2025, retrieving roughly 680 records. After excluding 570 papers that lacked a core imine linkage, definitive crystallographic or spectroscopic geometry, or featured heterometallic centers, and a further 60 that lacked quantitative IC50 cytotoxicity data or docking studies, they distilled the field down to 50 references describing 66 distinct Zn(II) Schiff base complexes, each characterized by techniques ranging from FT-IR and NMR to single-crystal X-ray diffraction.</p>
<p>The comparative analysis reveals that geometry is destiny. Four-coordinate tetrahedral architectures, often built on symmetric N2O2 Salen-type frameworks, excel at dampening charge polarity and optimizing the initial kinetics of cellular uptake. Six-coordinate octahedral complexes, by contrast, offer mechanical advantages inside the cytosol: their geometric distortions create optimized hydrogen-bonding directions and expose planar regions that enable targeted binding to the minor groove of DNA, inducing conformational strain on the double helix and triggering apoptotic cascades in cancer cells while bypassing the efflux pumps responsible for cisplatin resistance. Square-planar designs occupy a middle ground, their flat surfaces ideal for intercalating between DNA base pairs.</p>
<p>The standout performer is a tridentate, octahedral complex labeled 47, built from a pyrazole-pyridyl thiosemicarbazone ligand with acetate and water co-ligands. It achieved an extraordinary IC50 of 0.2013 micromolar against MCF-7 breast cancer cells, the lowest value in the entire dataset. Close behind were a square-planar benzhydrazone complex (IC50 of 4.48 micromolar against MCF-7) that intercalates into nucleic acids, and an ionic complex pairing 1,2-diaminocyclohexane with tolfenamate counterions (IC50 of 5.73 micromolar), whose potency tracks with a strong binding affinity for transfer RNA. In the lung cancer arena, a tetradentate octahedral macrocyclic series showed that tightening computed binding to the VEGFR2 kinase pocket from -7.37 to -8.37 kilocalories per mole translated into a 26.4 percent improvement in cell killing, dropping the IC50 from 8.7 to 6.4 micromolar against A549 cells.</p>
<p>Perhaps the most striking finding is what the authors call the affinity-potency paradox. Several complexes posted jaw-docking computational scores, including one that docked against a DNA dodecamer at -30.56 kilocalories per mole and another that scored an almost unbelievable -301.72 kilocalories per mole against calf thymus DNA, yet proved essentially inactive in living cell assays, with IC50 values above 100 micromolar. The culprit, the review argues, is pharmacokinetics rather than chemistry: neutral, highly symmetric frameworks with enormous crystalline lattice energies are effectively insoluble in water, causing micro-precipitation and sequestration in culture media before the complexes ever reach their targets. Static, cell-free docking scores, the authors caution, are qualitative approximations that must always be validated by experimental cytotoxicity testing.</p>
<p>The review also uncovered a spectroscopic fingerprint that could accelerate future drug design. When the infrared stretching frequency of the azomethine C=N bond was mapped against cytotoxic potency, a clear pattern emerged. The most potent complexes, including the lead compound 47 at 1587 wavenumbers and the tRNA-binding complex 43 at 1599 wavenumbers, all showed markedly red-shifted, lower-energy imine bands, indicating reduced bond order and an electronically adaptive framework capable of flexible target engagement. Conversely, weak or inactive complexes displayed unshifted or blue-shifted bands above 1600 wavenumbers, signatures of rigid, electronically isolated imine units that cannot reorganize to disrupt cell-survival pathways. A simple IR measurement, in other words, may predict which zinc complexes will kill cancer cells before expensive biological screening begins.</p>
<p>Subtle structural changes can also flip biological outcomes entirely. In one striking example, swapping a chlorine substituent for bromine on otherwise identical frameworks reversed the pharmacological profile: the chlorine-bearing complex showed strong antibacterial activity against E. coli with a minimum inhibitory concentration of 64 micrograms per milliliter but weak cytotoxicity against liver cancer cells, while its bromine analogue lost antibacterial potency altogether yet became a highly effective apoptotic agent against HepG2 liver cancer cells. The lesson, the authors note, is that broad generalizations about halogenation effects are invalid; inductive electronic effects must be mapped separately for antimicrobial and oncological pathways.</p>
<p>Significant hurdles remain before any of these compounds reach the clinic. Most primary studies report only raw IC50 values without mapping caspase cascades, mitochondrial depolarization, or cell-cycle arrest, and few include parallel toxicity testing against healthy cell lines, leaving true therapeutic indices unknown. ADME profiles, in vivo efficacy, and systemic bioavailability are almost entirely uncharacterized, and solubility remains a persistent bottleneck, with some complexes dissolving only in organic co-solvents and others refusing to dissolve at all, redirecting them toward photoactive materials instead of medicine. Still, by mapping structure-activity relationships across tetrahedral, square-planar, and octahedral configurations and tying them to spectroscopic and computational benchmarks, the review delivers what inorganic chemists have lacked: a predictable, rational framework for designing non-platinum metallodrugs that pair zinc&#8217;s biocompatibility with targeted, geometry-driven cytotoxicity.</p>
<p><strong>Subject of Research:</strong> Synthesis, characterization, and anticancer activity of Zn(II) Schiff base coordination complexes</p>
<p><strong>Article Title:</strong> A review on the comparative analysis of synthesis, characterization, and biological studies of Zn(II) schiff base complexes</p>
<p><strong>Article References:</strong> A review on the comparative analysis of synthesis, characterization, and biological studies of Zn(II) schiff base complexes. (n.d.). <a href="https://doi.org/10.1007/s44371-026-01005-9" rel="noopener noreferrer">https://doi.org/10.1007/s44371-026-01005-9</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s44371-026-01005-9" rel="noopener noreferrer">10.1007/s44371-026-01005-9</a></p>
<p><strong>Keywords:</strong> zinc complexes, Schiff base, coordination chemistry, anticancer, metallodrugs, cisplatin resistance, molecular docking, structure-activity relationships, infrared spectroscopy, DNA binding, MCF-7, drug design</p>
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