<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>cytochrome b &#8211; Science</title>
	<atom:link href="https://scienmag.com/tag/cytochrome-b/feed/" rel="self" type="application/rss+xml" />
	<link>https://scienmag.com</link>
	<description></description>
	<lastBuildDate>Thu, 24 Sep 2026 21:34:25 +0000</lastBuildDate>
	<language>en-US</language>
	<sy:updatePeriod>
	hourly	</sy:updatePeriod>
	<sy:updateFrequency>
	1	</sy:updateFrequency>
	<generator>https://wordpress.org/?v=7.1.2</generator>

<image>
	<url>https://scienmag.com/wp-content/uploads/2024/07/cropped-scienmag_ico-32x32.jpg</url>
	<title>cytochrome b &#8211; Science</title>
	<link>https://scienmag.com</link>
	<width>32</width>
	<height>32</height>
</image> 
<site xmlns="com-wordpress:feed-additions:1">73899611</site>	<item>
		<title>New DNA Sequencing Tool Reads Broken Genetic Clues to Name Species in Mixed and Degraded Samples</title>
		<link>https://scienmag.com/new-dna-sequencing-tool-reads-broken-genetic-clues-to-name-species-in-mixed-and-degraded-samples/</link>
		
		<dc:creator><![CDATA[Juliet Wilcox]]></dc:creator>
		<pubDate>Thu, 24 Sep 2026 21:34:25 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[biodiversity monitoring]]></category>
		<category><![CDATA[biodiversity monitoring using DNA]]></category>
		<category><![CDATA[challenges of fragmented and contaminated DNA]]></category>
		<category><![CDATA[COI]]></category>
		<category><![CDATA[cytochrome b]]></category>
		<category><![CDATA[degraded DNA]]></category>
		<category><![CDATA[degraded DNA analysis techniques]]></category>
		<category><![CDATA[DNA metabarcoding]]></category>
		<category><![CDATA[DNA sequencing for wildlife crime detection]]></category>
		<category><![CDATA[food authenticity testing with DNA]]></category>
		<category><![CDATA[food fraud]]></category>
		<category><![CDATA[forensic DNA analysis in illegal animal trade]]></category>
		<category><![CDATA[forensic science]]></category>
		<category><![CDATA[innovative tools for species fraud detection]]></category>
		<category><![CDATA[legal medicine and forensic genetics advancements]]></category>
		<category><![CDATA[mitochondrial DNA]]></category>
		<category><![CDATA[mitochondrial DNA metabarcoding]]></category>
		<category><![CDATA[mixed species sample identification]]></category>
		<category><![CDATA[next-generation sequencing in forensic science]]></category>
		<category><![CDATA[species identification]]></category>
		<category><![CDATA[targeted next-generation sequencing]]></category>
		<category><![CDATA[vertebrate species]]></category>
		<category><![CDATA[wildlife species identification from processed samples]]></category>
		<category><![CDATA[wildlife trafficking]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=212711</guid>

					<description><![CDATA[Researchers have developed a targeted next-generation sequencing system that simultaneously reads four mitochondrial genes to identify vertebrate species in degraded, mixed, and processed DNA samples with forensic-grade sensitivity.]]></description>
										<content:encoded><![CDATA[<p>Forensic scientists and wildlife investigators now have a powerful new ally in the fight against species fraud and illegal animal trade. A research team led by scientists at Southern Medical University and Zhaoqing Medical College in Guangdong, China, has developed a mitochondrial DNA metabarcoding system based on targeted next-generation sequencing (tNGS) that can identify vertebrate species even when the DNA in a sample is fragmented, contaminated with multiple species, or heavily processed. The system, described in the International Journal of Legal Medicine, was designed from the ground up to meet the rigorous standards demanded by forensic practice, and its performance characteristics suggest it could become a workhorse tool in wildlife crime investigations, food authenticity testing, and biodiversity monitoring programs around the world.</p>
<p>The core challenge the researchers set out to solve is a familiar one to anyone working with trace biological evidence: DNA at crime scenes, in processed foods, or in seized wildlife products is rarely pristine. Heat, chemicals, time, and environmental exposure all shred the long DNA molecules that standard analytical methods depend on. Traditional DNA barcoding, which relies on amplifying a single gene region of several hundred base pairs, often fails outright when the template DNA is broken into pieces shorter than the target. The new assay sidesteps this limitation by targeting four mitochondrial genes simultaneously: cytochrome b (Cytb), cytochrome c oxidase subunit I (COI), 16S ribosomal RNA, and 12S ribosomal RNA. Because each of these markers can be amplified as short fragments, the probability that at least one usable stretch of DNA survives in a degraded sample rises dramatically.</p>
<p>Mitochondrial DNA is the molecule of choice for species identification for good reason. Each cell contains hundreds to thousands of mitochondrial copies compared with just two copies of any nuclear gene, which means mitochondrial targets are far more likely to yield amplifiable material from tiny or damaged samples. Moreover, the mitochondrial genome accumulates mutations at a rate that allows closely related species to be distinguished while remaining conserved enough that universal primers can bind across a wide range of vertebrate groups. By combining four independent markers in a single multiplex reaction, the new system builds redundancy into the analysis: if one marker fails to amplify or gives an ambiguous result, the other three can still deliver a species call.</p>
<p>The technical architecture of the assay follows the logic of targeted amplicon sequencing. Rather than sequencing entire mitochondrial genomes, which would be wasteful and impractical for degraded templates, the system uses carefully designed primer pairs to amplify short, informative regions of the four marker genes. These amplicons are then indexed with sample-specific barcodes, pooled, and sequenced in parallel on a next-generation sequencing platform. The resulting reads are processed through a bioinformatic pipeline that filters out sequencing errors and chimeric artifacts, clusters the sequences, and matches them against reference databases. This multiplex design means dozens of samples can be analyzed simultaneously, dramatically reducing both cost and turnaround time compared with running each marker separately.</p>
<p>What distinguishes this study from many previous metabarcoding efforts is the systematic forensic validation that accompanied the development. Following the recommendations of the International Society for Forensic Genetics (ISFG) for non-human DNA analysis, the team subjected the assay to a battery of performance tests covering the scenarios that matter most in real casework. Sensitivity testing revealed that just 10 picograms of genomic DNA from a single species—roughly the amount of DNA in a fraction of a single cell—was sufficient to detect at least one of the four markers for all species tested. When the input was raised to 100 picograms, reliable species identification was achieved using all four markers simultaneously. These thresholds place the assay firmly in the range needed for trace evidence analysis, where investigators often work with material scraped from a single bone fragment or a smudge on a knife blade.</p>
<p>Mixture analysis, a critical capability for food fraud detection and wildlife trafficking cases where products may contain multiple species, produced equally impressive results. In an equimolar mixture containing ten different species with a total DNA input of just one nanogram, the assay correctly identified all ten contributors. More striking still, the system detected minor components in binary mixtures down to a 99:1 ratio, meaning a species making up only one percent of the DNA in a sample could still be flagged. This level of sensitivity for minority contributors is exactly what is needed to catch adulteration, where expensive meat or seafood is diluted with cheaper substitutes at low percentages precisely to evade detection.</p>
<p>The degradation studies may be the most consequential for practical applications. The researchers deliberately fragmented DNA in experimental samples and then challenged the assay with the damaged templates, alongside DNA extracted from highly processed food matrices such as cooked and commercially prepared meat products. In both scenarios, the four-marker system recovered enough sequence information to make species assignments, demonstrating that the short amplicon strategy performs as intended under the harshest conditions forensic analysts are likely to encounter. Processed foods represent one of the most common contexts for species fraud, and the ability to identify constituents in cooked, canned, or otherwise transformed products closes a significant gap in food authentication testing.</p>
<p>Validation extended beyond the laboratory to genuine casework samples, where the tNGS-based multiplex assay demonstrated broad-spectrum vertebrate identification across real-world evidence. The authors report that these case studies confirmed the practical value of the system for three major application areas: curbing wildlife trafficking, mitigating food fraud, and facilitating biodiversity monitoring. In wildlife trafficking investigations, the ability to identify species from seized products—whether carved ivory, dried meat, traditional medicine ingredients, or leather goods—provides prosecutors with the species-level evidence needed to establish that a crime against protected fauna occurred. For food regulators, the assay offers a screening tool capable of auditing supply chains for substitution and mislabeling. For ecologists, the same chemistry can be applied to environmental DNA samples to survey vertebrate diversity in a given habitat without needing to observe or capture animals directly.</p>
<p>The development team, which included collaborators from the Guangzhou Public Security Bureau, the Nanchang Police Dog Base of the Ministry of Public Security, Jinan University, and the Anti-Drug Technology Center of Guangdong Province, emphasized adherence to ethical research standards throughout the study. Animal specimens were provided by the Guangzhou Zoo and the Guangzhou Wildlife Research Center with approval from the Animal Ethics Committee of those institutions. The work was funded in part by the National Natural Science Foundation of China and the Jiangxi Provincial Key Research and Development Program, reflecting the strategic priority that Chinese research agencies have placed on forensic multi-omics and wildlife protection technology.</p>
<p>Looking ahead, the convergence of targeted sequencing, multiplex mitochondrial barcoding, and rigorous forensic validation points toward a future where species identification becomes as routine and standardized as human DNA profiling is today. The reference sequences used in the assay are publicly accessible through the National Center for Biotechnology Information database, and the authors have made raw data available with the publication, supporting transparency and reproducibility. As sequencing costs continue to fall and reference databases expand, systems like this one could be deployed in customs laboratories, food inspection agencies, and conservation field stations worldwide. For investigators racing to document the scale of illegal wildlife trade—a market estimated to be worth billions of dollars annually—and for consumers who deserve to know what is actually in their food, a tool that can name a species from a fragment of damaged DNA may prove to be one of the most consequential forensic innovations of the decade.</p>
<p><strong>Subject of Research:</strong> A mitochondrial DNA metabarcoding system based on targeted next-generation sequencing for forensic identification of vertebrate species in degraded and mixed DNA samples</p>
<p><strong>Article Title:</strong> A mitochondrial DNA metabarcoding system based on tNGS enables multiplex identification of vertebrate species in samples containing degraded and mixed DNA</p>
<p><strong>Article References:</strong> Liu, X., Su, C., Wei, R., Chen, X., Le, J., Xiao, G., Chang, J., Liang, S., Wu, X., Liu, C., Liu, H., Du, W., Liu, C., &amp; Chen, L. (2026). A mitochondrial DNA metabarcoding system based on tNGS enables multiplex identification of vertebrate species in samples containing degraded and mixed DNA. <em>International Journal of Legal Medicine</em>. <a href="https://doi.org/10.1007/s00414-026-04024-4" rel="noopener noreferrer">https://doi.org/10.1007/s00414-026-04024-4</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s00414-026-04024-4" rel="noopener noreferrer">10.1007/s00414-026-04024-4</a></p>
<p><strong>Keywords:</strong> DNA metabarcoding, targeted next-generation sequencing, mitochondrial DNA, forensic science, wildlife trafficking, food fraud, species identification, degraded DNA, cytochrome b, COI, biodiversity monitoring, vertebrate species</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">212711</post-id>	</item>
		<item>
		<title>DNA From a Confiscated Flying Squirrel Reveals a Species Never Before Found in India</title>
		<link>https://scienmag.com/dna-from-a-confiscated-flying-squirrel-reveals-a-species-never-before-found-in-india/</link>
		
		<dc:creator><![CDATA[Margaret Porter]]></dc:creator>
		<pubDate>Tue, 22 Sep 2026 22:23:34 +0000</pubDate>
				<category><![CDATA[Climate]]></category>
		<category><![CDATA[conservation genetics]]></category>
		<category><![CDATA[cranio-dental morphometrics]]></category>
		<category><![CDATA[cytochrome b]]></category>
		<category><![CDATA[diversity of flying squirrels in India]]></category>
		<category><![CDATA[Flying squirrel genetic identification]]></category>
		<category><![CDATA[forensic analysis of confiscated animals]]></category>
		<category><![CDATA[genetic testing in mammal taxonomy]]></category>
		<category><![CDATA[giant flying squirrels]]></category>
		<category><![CDATA[Himalayan wildlife forensic case]]></category>
		<category><![CDATA[illegal wildlife trade and species identification]]></category>
		<category><![CDATA[implications for Indian mammal biodiversity]]></category>
		<category><![CDATA[mitochondrial DNA]]></category>
		<category><![CDATA[Petaurista yunanensis]]></category>
		<category><![CDATA[Petaurista yunanensis discovery]]></category>
		<category><![CDATA[phylogenetic analysis]]></category>
		<category><![CDATA[role of zoological surveys in conservation]]></category>
		<category><![CDATA[Sikkim India]]></category>
		<category><![CDATA[taxonomic challenges of Petaurista genus]]></category>
		<category><![CDATA[taxonomy]]></category>
		<category><![CDATA[wildlife conservation in Sikkim]]></category>
		<category><![CDATA[wildlife forensics]]></category>
		<category><![CDATA[wildlife trafficking]]></category>
		<category><![CDATA[Yunnan Giant Flying Squirrel in India]]></category>
		<category><![CDATA[Zoological Survey of India]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=208291</guid>

					<description><![CDATA[Forensic DNA analysis and skull morphometry of a flying squirrel seized in Sikkim, India have identified it as a Yunnan Giant Flying Squirrel, a species never before genetically confirmed in the country.]]></description>
										<content:encoded><![CDATA[<p>A dead flying squirrel seized in the Himalayan state of Sikkim has turned into one of the more consequential wildlife forensic cases in recent Indian conservation science. When the confiscated carcass arrived at the Zoological Survey of India (ZSI) headquarters in Kolkata, submitted by the Divisional Forest Officer of the Jalpaiguri Forest Division in West Bengal, scientists faced a familiar but stubborn problem: which species was it? Giant flying squirrels of the genus Petaurista are notoriously difficult to tell apart, and the answer in this case carried real legal and scientific weight. Genetic testing and detailed skull measurements have now identified the animal as a Yunnan Giant Flying Squirrel, Petaurista yunanensis, a species that had never been genetically confirmed from India before, according to a study published in the journal Discover Conservation.</p>
<p>The identification matters because it was achieved through a forensic investigation rather than a field survey, and because the genus Petaurista has long been in taxonomic disarray. Flying squirrels belong to the family Sciuridae, the most diverse group of gliding mammals within the rodents, which includes 51 genera and 311 species. India hosts 12 of the 19 giant flying squirrel species recognized globally, distributed mainly across the Western Ghats, peninsular India, and the northern and northeastern Himalayan regions. Yet these animals are elusive, crepuscular and cryptic, which makes field studies difficult, and they are increasingly threatened by habitat degradation and hunting driven by cultural and ethno-zoological practices.</p>
<p>The deeper complication is that scientists themselves have not agreed on how many Petaurista species exist. Overlapping pelage colors, dental traits and cranial features have fueled decades of disagreement. Some taxonomists treated Petaurista albiventer as a synonym of P. petaurista; others folded P. hainana and P. yunanensis into P. philippensis as subspecies; more recent genetic and morphological work suggests that P. hainana, P. albiventer and P. yunanensis may each be distinct species. The number of recognized species in the genus has consequently climbed from five to as many as 19, while the IUCN Red List currently recognizes only ten, eight of which are believed to occur in India. Against this backdrop of ambiguity, a confiscated specimen cannot simply be matched to a picture in a field guide.</p>
<p>To resolve the identity of the seized animal, catalogued as specimen FI-434, the ZSI team led by Stanzin Dolker and Mukesh Thakur applied an integrated taxonomy approach, combining molecular forensics with classical morphology. Genomic DNA was extracted using a commercial tissue kit, and two partial mitochondrial genes, cytochrome b (Cytb) and 16S rRNA, were amplified by polymerase chain reaction with universal primers. The cleaned amplicons were sequenced on a capillary genetic analyzer, and the resulting sequences were screened against public databases using BLAST, with homologous sequences above an 88 percent similarity threshold downloaded from NCBI GenBank for comparison.</p>
<p>The genetic results were striking. The two novel sequences showed 96.69 percent similarity to the Cytb gene and 98.99 percent similarity to the 16S rRNA gene of Petaurista yunanensis, with the lowest recorded genetic distance of 0.040 to that species. A Bayesian phylogenetic tree reconstructed in BEAST 2.5, using the HKY substitution model selected by the Akaike information criterion and run through 20 million Markov Chain Monte Carlo generations, placed the confiscated specimen firmly within the P. yunanensis clade. Maximum likelihood analysis of both genes in MEGA X, using the General Time Reversible model, recovered the same clustering pattern. But the trees also revealed something unexpected: the specimen diverged from previously sampled P. yunanensis by roughly 2.19 million years, indicating that it represents a distinct phylogenetic lineage within the species and pointing to cryptic diversity in a genus already known for its tangled evolutionary history.</p>
<p>The molecular work also exposed a problem lurking in public databases. Two GenBank sequences submitted under the name Petaurista albiventer, accessions JQ928701 and JQ928702, clustered instead with P. yunanensis in the phylogeny, showing a genetic distance of only 0.01 to that species compared with 0.071 to other P. albiventer samples. The study&#8217;s authors note that this annotation discrepancy, in which sequences labeled as one species genetically match another, complicates forensic and systematic work that relies on reference databases. For investigators attempting to prove the identity of trafficked animals in court, mislabeled reference sequences can undermine otherwise airtight genetic evidence.</p>
<p>Morphology provided independent support. The team extracted the skull from the specimen and recorded 25 cranio-dental measurements, 17 cranio-maxillary and 8 mandibular, using a digital vernier caliper with 0.01 millimeter precision. These were compared with 52 intact adult skulls from eight Petaurista species held in the National Zoological Collection of the ZSI. A principal component analysis conducted in RStudio showed that species such as P. petaurista, P. caniceps and P. sybilla formed well-separated clusters, while P. philippensis and P. albiventer overlapped broadly, and the seized specimen fell squarely within that overlapping zone, indicating close morphometric affinity with both. A permutational multivariate analysis of variance tested the statistical significance of the species groupings. Pelage features of the specimen, including chestnut to dark reddish dorsal fur, a large body size, an orange tail with a black tip, an orange ventral surface and a yellow shoulder patch, differed in some details from the topotypic P. yunanensis illustrated in recent Chinese work, but the researchers attribute such deviations to the geographic and individual variation in coat color known to plague Himalayan populations, and note that cranio-dental traits are considered more stable taxonomic characters.</p>
<p>The case carries two implications, one forensic and one biogeographic. On the forensic side, the study demonstrates that molecular forensics can resolve species identities even for little-known taxa whose anatomy resists straightforward identification, which is essential for prosecuting wildlife trafficking cases under India&#8217;s legal framework. On the biogeographic side, it provides the first genetic evidence suggesting that P. yunanensis may occur in India, since the animal was seized in a village area of Sikkim. The authors urge caution, however: because the specimen came from a confiscation rather than a documented sighting, the possibility that it was illegally transported from a neighboring country such as China, Nepal or Bhutan cannot be ruled out. Systematic field surveys are needed to confirm whether the species genuinely lives within Indian territory.</p>
<p>The study also lays bare a broader infrastructure gap. The researchers point out that reference specimens and comparative genetic data are lacking for several Indian Petaurista species, including P. elegans, P. nobilis, P. mechukaensis and P. mishmiensis, a shortfall that limits both taxonomy and forensic identification. Without vouchered reference material and verified sequences, investigators and taxonomists alike are left working with incomplete baselines in a region that is a hotspot for illegal wildlife trade. The novel sequences generated in this case have been deposited in NCBI GenBank under accession numbers PX826255 for cytochrome b and PX806263 for 16S rRNA, adding two verified data points to a sparsely populated reference landscape.</p>
<p>What began as a routine forensic submission from a forest officer has ended as a case study with implications far beyond a single carcass. It signals that the Eastern Himalaya may harbor flying squirrel lineages still unrecognized by science, that GenBank annotations require careful scrutiny, and that the front line of biodiversity discovery increasingly runs through evidence rooms and molecular laboratories rather than remote forest trails. For the giant flying squirrels of the Himalaya, gliding quietly through the canopy under the cover of dusk, the surest path to being counted, and protected, may now begin with a seized specimen, a skull, a caliper and two short strands of mitochondrial DNA.</p>
<p><strong>Subject of Research:</strong> Integrated wildlife forensics and molecular systematics used to identify a confiscated giant flying squirrel specimen from Sikkim, India.</p>
<p><strong>Article Title:</strong> Integrated wildlife forensics and systematics identify a confiscated specimen of Yunnan Giant Flying Squirrel (Petaurista yunanensis) seized in Sikkim, India: a case study</p>
<p><strong>Article References:</strong> Dolker, S., Mitra, S., Pramanick, S., Wangmo, L. K., Kamalakannan, M., Mohan, N., Sharma, L. K., &amp; Thakur, M. (2026). Integrated wildlife forensics and systematics identify a confiscated specimen of Yunnan Giant Flying Squirrel (Petaurista yunanensis) seized in Sikkim, India: a case study. <em>Discover Conservation, 3</em>(1), Article 24. <a href="https://doi.org/10.1007/s44353-026-00094-y" rel="noopener noreferrer">https://doi.org/10.1007/s44353-026-00094-y</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s44353-026-00094-y" rel="noopener noreferrer">10.1007/s44353-026-00094-y</a></p>
<p><strong>Keywords:</strong> wildlife forensics, Petaurista yunanensis, giant flying squirrels, mitochondrial DNA, phylogenetic analysis, cytochrome b, cranio-dental morphometrics, wildlife trafficking, Sikkim India, taxonomy, conservation genetics, Zoological Survey of India</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">208291</post-id>	</item>
		<item>
		<title>Camouflage Confuses Chagas Bug Identification as DNA Steps In</title>
		<link>https://scienmag.com/camouflage-confuses-chagas-bug-identification-as-dna-steps-in/</link>
		
		<dc:creator><![CDATA[Gavin Prescott]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 22:21:48 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[blood-sucking insect habitat in Brazil]]></category>
		<category><![CDATA[Brazil]]></category>
		<category><![CDATA[camouflage]]></category>
		<category><![CDATA[Chagas bug identification challenges]]></category>
		<category><![CDATA[Chagas disease]]></category>
		<category><![CDATA[Chagas disease vector ecology]]></category>
		<category><![CDATA[convergent evolution]]></category>
		<category><![CDATA[Copernicia prunifera]]></category>
		<category><![CDATA[cytochrome b]]></category>
		<category><![CDATA[disease vector identification complexities]]></category>
		<category><![CDATA[DNA analysis for insect species differentiation]]></category>
		<category><![CDATA[impact of natural selection on insect appearance]]></category>
		<category><![CDATA[incomplete lineage sorting]]></category>
		<category><![CDATA[ITS2]]></category>
		<category><![CDATA[limitations of visual species diagnosis]]></category>
		<category><![CDATA[mito-nuclear discordance]]></category>
		<category><![CDATA[parasite transmission by blood-sucking insects]]></category>
		<category><![CDATA[phenotypic convergence]]></category>
		<category><![CDATA[phenotypic convergence in triatomine insects]]></category>
		<category><![CDATA[Rhodnius]]></category>
		<category><![CDATA[Rhodnius neglectus vs Rhodnius nasutus]]></category>
		<category><![CDATA[role of molecular methods in entomology]]></category>
		<category><![CDATA[Triatominae]]></category>
		<category><![CDATA[triatomine bug habitat in carnaúba palms]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=199176</guid>

					<description><![CDATA[Brazilian researchers show that Rhodnius neglectus bugs living in carnaúba palms can mimic the light brown coloration of Rhodnius nasutus, forcing a rethink of color-based species identification in Chagas disease vectors.]]></description>
										<content:encoded><![CDATA[<p>In the semiarid backlands of northeastern Brazil, two closely related species of blood-sucking insects have been hiding in plain sight, and from each other. Rhodnius neglectus and Rhodnius nasutus are triatomine bugs, the vectors responsible for transmitting Trypanosoma cruzi, the parasite that causes Chagas disease. For decades, field entomologists have relied partly on overall body coloration to tell these species apart. A new study published in Parasites &amp; Vectors now shows that this trusted visual cue can fail dramatically when the insects share the same distinctive habitat: the carnaúba palm, Copernicia prunifera. The research reveals a striking case of phenotypic convergence, in which natural selection appears to have pushed two different species toward remarkably similar outward appearances, complicating species diagnosis in insects of direct medical importance.</p>
<p>The investigation was led by Márcio Galvão Pavan of the Oswaldo Cruz Institute (Fiocruz) in Rio de Janeiro, together with Rodrigo Gurgel-Gonçalves of the University of Brasília and colleagues, including Fernando Abad-Franch and Fernando Araujo Monteiro, who contributed equally to the work. The team set out to answer a deceptively simple question: when light-colored bugs turn up inside carnaúba palms, are they R. nasutus, the species whose primary habitat these palms represent in northeastern Brazil, or could they actually be R. neglectus wearing, in effect, a different species&#8217; colors? The answer, according to the combined genetic and morphological evidence, is frequently the latter.</p>
<p>The study&#8217;s foundation lies in an ecological and biogeographical puzzle. Rhodnius nasutus is typical of the Caatinga, Brazil&#8217;s seasonally dry, thorny scrubland biome, where it dwells chiefly in the crowns of Copernicia prunifera palms and is characteristically light brown in color. Rhodnius neglectus, by contrast, is a core-Cerrado species associated with Mauritia flexuosa palms and typically shows a much darker brown body. Because the Caatinga and Cerrado intergrade across a broad transition zone, the two palm species, and the bugs that inhabit them, occasionally come into geographic contact. That overlap set the stage for the color confusion the researchers document.</p>
<p>To untangle the situation, the team sampled triatomines from C. prunifera palms across the semiarid Caatinga and the Caatinga-Cerrado transition, comparing them with specimens collected from core-Cerrado M. flexuosa palms. Every insect was first identified by phenotype, meaning its visible color pattern and morphology. The researchers then turned to genetics, sequencing clones of the mitochondrial cytochrome b gene, a standard barcoding marker, and the nuclear ribosomal DNA internal transcribed spacer 2, or ITS2. This two-marker strategy allowed the team to compare signals from the maternally inherited mitochondrial genome with those from the nuclear genome, a contrast that proved decisive.</p>
<p>The morphological results were clear at the extremes but murky in the middle. Adult specimens from core-Cerrado Mauritia palms consistently displayed the dark brown coloration typical of R. neglectus, while adults from core-Caatinga localities showed the light brown hue typical of R. nasutus. But in bugs captured in carnaúba palms from the Caatinga-Cerrado transition zone and parts of the central-western Caatinga, color patterns were dubious, matching neither type reliably. Specimens that looked like typical light brown R. nasutus could not confidently be assigned on appearance alone, raising the possibility that field identifications based on color might have been systematically wrong in exactly these regions.</p>
<p>Genetics began to resolve the ambiguity. Bayesian genealogies built from cytochrome b sequences placed the dubious-phenotype specimens that resembled typical R. nasutus in a sub-clade that is sister to typical R. neglectus from Mauritia flexuosa palms, with roughly 2% mean cytb divergence separating the two sub-clades. In other words, the bugs that looked like R. nasutus carried mitochondrial genomes pointing to R. neglectus ancestry. This mitochondrial signal effectively dissolved the taxonomic uncertainty created by the shared coloration, demonstrating that insects occupying carnaúba palms in the transition zone belong, at least by maternal lineage, with R. neglectus.</p>
<p>The nuclear ITS2 marker told a less tidy story. ITS2 genealogies recovered both R. neglectus and R. nasutus as paraphyletic, meaning individuals of each nominal species were scattered across the gene tree rather than clustering neatly by species. Such patterns often arise when recently diverged species still share ancestral genetic variation. When the researchers applied a multispecies-coalescent analysis, a statistical framework designed to account for this shared ancestry, the dubious-phenotype bugs from C. prunifera clustered with typical R. neglectus. The analysis suggested that the messy ITS2 picture reflects incomplete lineage sorting, the retention of ancestral polymorphisms, rather than hybridization or misassigned species limits. The mito-nuclear discordance observed in the study is thus itself scientifically informative, illustrating how different genomes can carry different historical signals during the early stages of species divergence.</p>
<p>Why would two species converge on the same color? The authors propose that predator-driven natural selection is the most plausible mechanism. Triatomine bugs live in palm crowns where the substrate color is set by the palm&#8217;s dried leaf bases and fibers. In the core Cerrado, dark Mauritia crowns favor dark R. neglectus; in the core Caatinga, the lighter carnaúba substrate favors pale R. nasutus. But when R. neglectus colonizes carnaúba palms, individuals whose coloration better matches the light palm-crown substrate presumably enjoy better camouflage against visual predators such as birds and lizards. Over time, this selection pressure could produce R. neglectus populations whose light brown bodies are nearly indistinguishable from typical R. nasutus. This is a textbook scenario of adaptive phenotypic convergence, conceptually related to classic camouflage and mimicry systems in evolutionary biology, but documented here in disease vectors, where species identity has public health consequences.</p>
<p>The practical implications are significant. Chagas disease remains a major neglected tropical disease in Latin America, and surveillance programs depend on correctly identifying which vector species are present in a given area, because species differ in habitat preferences, domestic invasion behavior, and epidemiological relevance. If R. neglectus can masquerade as R. nasutus, field records based on color alone may misattribute vectors to the wrong species and thereby misguide control strategies. The study&#8217;s findings, the authors argue, call into question the widespread use of overall body color as a key phenotypic character in triatomine taxonomy. As molecular tools become more accessible, integrating DNA-based confirmation into routine vector surveillance may be essential wherever palm-dwelling Rhodnius species co-occur or share similar microhabitats.</p>
<p>Beyond the immediate applied concerns, the work contributes to a broader understanding of how color variation evolves in triatomines and how convergence can erode the morphological signals taxonomists depend on. The researchers received support from Brazil&#8217;s CAPES and CNPq funding agencies, and sampling was conducted under permit from the country&#8217;s biodiversity authority, ICMBio. By combining careful field collection across two biomes with mitochondrial and nuclear sequence analysis and modern coalescent modeling, the team has shown that even a character as apparently straightforward as body color can be shaped powerfully by ecology, and that species identities written in DNA may diverge sharply from those written on the insect&#8217;s back. For the bugs of the carnaúba palms, looking like the neighbor may be good for survival, but it makes life considerably harder for the scientists trying to tell them apart.</p>
<p><strong>Subject of Research:</strong> Phenotypic convergence in the Chagas disease vector bugs Rhodnius neglectus and Rhodnius nasutus inhabiting Copernicia prunifera palms in Brazil</p>
<p><strong>Article Title:</strong> Phenotypic convergence in Chagas disease vectors: Rhodnius neglectus from Copernicia prunifera palms may express the typical Rhodnius nasutus color phenotype</p>
<p><strong>Article References:</strong> Pavan, M. G., Gurgel-Gonçalves, R., Corrêa-Antônio, J., Morelli, K. A., Bahia, A. C., Abad-Franch, F., &amp; Monteiro, F. A. (2026). Phenotypic convergence in Chagas disease vectors: Rhodnius neglectus from Copernicia prunifera palms may express the typical Rhodnius nasutus color phenotype. <em>Parasites &amp;amp; Vectors</em>. <a href="https://doi.org/10.1186/s13071-026-07651-3" rel="noopener noreferrer">https://doi.org/10.1186/s13071-026-07651-3</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s13071-026-07651-3" rel="noopener noreferrer">10.1186/s13071-026-07651-3</a></p>
<p><strong>Keywords:</strong> Triatominae, Rhodnius, Chagas disease, phenotypic convergence, convergent evolution, camouflage, Copernicia prunifera, cytochrome b, ITS2, incomplete lineage sorting, mito-nuclear discordance, Brazil</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">199176</post-id>	</item>
		<item>
		<title>Fried, Roasted, or Quenched in Vinegar: Pangolin Scales Still Give Away Their Secrets</title>
		<link>https://scienmag.com/fried-roasted-or-quenched-in-vinegar-pangolin-scales-still-give-away-their-secrets/</link>
		
		<dc:creator><![CDATA[Margaret Porter]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 14:16:59 +0000</pubDate>
				<category><![CDATA[Climate]]></category>
		<category><![CDATA[challenges in combating pangolin smuggling]]></category>
		<category><![CDATA[conservation]]></category>
		<category><![CDATA[cytochrome b]]></category>
		<category><![CDATA[DNA barcoding]]></category>
		<category><![CDATA[DNA degradation]]></category>
		<category><![CDATA[effects of processing on pangolin scale recognition]]></category>
		<category><![CDATA[forensic analysis of pangolin scales]]></category>
		<category><![CDATA[illegal pangolin scale trade]]></category>
		<category><![CDATA[illegal wildlife trade]]></category>
		<category><![CDATA[impact of heat and acids on pangolin scales]]></category>
		<category><![CDATA[pangolin conservation and trafficking]]></category>
		<category><![CDATA[pangolin DNA identification]]></category>
		<category><![CDATA[pangolin species in Asia and Africa]]></category>
		<category><![CDATA[pangolin trafficking detection]]></category>
		<category><![CDATA[pangolins]]></category>
		<category><![CDATA[scale morphology]]></category>
		<category><![CDATA[Southeast Asian pangolin species]]></category>
		<category><![CDATA[species identification]]></category>
		<category><![CDATA[Sunda pangolin]]></category>
		<category><![CDATA[traditional Chinese medicine]]></category>
		<category><![CDATA[traditional Chinese medicine and pangolin products]]></category>
		<category><![CDATA[wildlife forensic techniques]]></category>
		<category><![CDATA[wildlife forensics]]></category>
		<category><![CDATA[wildlife trafficking]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=195291</guid>

					<description><![CDATA[New experimental research shows that even frying, roasting, or vinegar-quenching pangolin scales fails to erase their identifying features or destroy enough DNA to block forensic species identification.]]></description>
										<content:encoded><![CDATA[<p>Pangolins hold the grim distinction of being the most heavily trafficked mammals on Earth, and the smugglers moving them are constantly refining their methods. A new study from Singapore&#8217;s Centre for Wildlife Forensics has now put one of the latest trafficking tricks to a rigorous experimental test: processing pangolin scales with high heat and acids before shipping them, apparently to make the scales harder to recognize and their DNA harder to read. The results, published in Discover Conservation, are both a warning and a reassurance. Processing does visibly transform the scales, but it fails to erase the diagnostic features that betray a scale&#8217;s pangolin origin, and it falls well short of destroying the genetic evidence hidden inside.</p>
<p>The research team, led by Max De Yuan Khoo, focused on the Sunda pangolin (Manis javanica), a Critically Endangered species found across Southeast Asia and a frequent victim of regional trafficking. Demand for pangolin scales is driven largely by Traditional Chinese Medicine, where they are used for ailments ranging from poor circulation to insufficient lactation. Because overexploitation has devastated Asian populations, traffickers have increasingly turned to African pangolins, shipping tonnes of scales in maritime containers disguised among legal goods. In 2019, Singapore authorities intercepted three shipments totaling 37.5 tonnes of scales hidden in containers falsely declared as frozen beef, timber, and cassia seeds.</p>
<p>Historically, most seizures involved raw or dried scales that retain their natural appearance and are relatively easy to identify visually. Genetic studies have long confirmed that DNA barcoding works well on such material. But recent enforcement reports, corroborated at an Interpol–NParks Pangolin Identification Workshop in Singapore in October 2024, describe a shift toward trafficking scales that have already undergone intensive processing, such as the deep-frying and sand-frying traditionally applied before scales are ground into medicinal powder. Processing earlier in the supply chain could theoretically help traffickers disguise scales as ordinary dried goods like cassava chips, while heat and chemicals are known in food and forensic science to fragment DNA and cripple PCR amplification.</p>
<p>To test whether that strategy actually works, the team obtained scales from four Sunda pangolins killed on Singapore&#8217;s roads and recovered by the National Parks Board between December 2024 and May 2025, along with a fifth set of decades-old surrendered scales of unknown provenance. Fifteen trunk scales per animal were air-dried for at least two weeks, then measured for width, length, thickness, and manually assessed hardness. Three scales from each set were assigned to each of four treatments, all heating scales to around 200 degrees Celsius: deep frying in vegetable oil, frying in hot sand with oil, frying in sand followed by a 48-hour quench in vinegar at roughly pH 2.0, and roasting over charcoal. Fifteen unprocessed scales served as controls, giving 75 scales in total.</p>
<p>The physical transformation was dramatic. Across all treatments, scales thickened by an average of about 119 percent, with deep frying producing the most extreme swelling at nearly 206 percent. Width shrank by an average of 22.5 percent and length by 12.6 percent, and the scales turned yellow, grew brittle, blistered, curled, and occasionally developed burn marks. Yet crucially, the characteristic grooves and the scale bed—the structure where the scale attaches to the skin—survived every treatment. Because all four methods produced broadly similar appearances, the researchers compiled a visual identification guide, complete with ten common lookalike materials, that customs officers can use to spot processed pangolin scales even when they are mixed into shipments of legitimate dried goods.</p>
<p>On the genetic side, the team extracted DNA from tissue at the base of each scale, quantified it with a Qubit fluorometer and TapeStation instrument, and amplified a short 307-base-pair fragment of the mitochondrial cytochrome b gene, a marker short enough for degraded DNA yet variable enough to separate all pangolin species. Sequences were matched against the NCBI GenBank database, with a successful identification requiring a greater than 98 percent match to Manis javanica. Bayesian logistic regression models then estimated how DNA quantity and processing type influenced identification success, with random effects accounting for scales from the same individuals.</p>
<p>The findings defied expectations. DNA quantity turned out to be a weak predictor of success: even samples falling below the detection limits of the Qubit and TapeStation frequently yielded sequences good enough for definitive species assignment. The model-estimated probability of successful identification across all processing treatments averaged 89.7 percent. Roasting preserved DNA best, with a 98.9 percent identification probability, likely because uneven single-direction heating and an early stop before charring left much of the genetic material intact. Frying with sand and oil achieved 92.2 percent, deep frying 84.4 percent, and the harshest treatment—sand-frying followed by vinegar quenching, which combines thermal damage with acid-driven DNA breakage—still managed 76.3 percent. Every unprocessed control scale was successfully identified.</p>
<p>Even the decades-old surrendered scales offered a hopeful surprise: eight of twelve produced successful species identifications, providing preliminary evidence that DNA can persist in aged keratin despite prolonged storage. The authors attribute the overall resilience to the high copy number and protective packaging of mitochondrial DNA, and to the deliberately short PCR target, which suits fragmented genetic material. Sanger sequencing with conventional PCR remains the forensic gold standard, making this workflow practical for enforcement laboratories in resource-limited settings without requiring expensive next-generation sequencing.</p>
<p>Although the study used only the Sunda pangolin, the authors argue the findings generalize across all eight pangolin species, since their scales share similar keratin composition and undergo comparable processing in trade. The persistence of the scale bed after processing stands out as the single most reliable visual cue that a specimen is a pangolin scale, regardless of species. Future work should validate these patterns in African pangolins, whose scales differ somewhat in size and structure.</p>
<p>The takeaway for wildlife forensics is an integrative one: morphology offers a rapid, cheap first line of assessment in the field, while molecular tools provide confirmation and species-level resolution in the lab. For traffickers hoping that a hot wok and a bath of vinegar could launder their contraband into anonymity, the message from science is blunt—processed pangolin scales still look like pangolin scales, and what DNA survives is more than enough to convict them.</p>
<p><strong>Subject of Research:</strong> The effects of trade-related processing treatments on the morphology and genetic identifiability of trafficked pangolin scales</p>
<p><strong>Article Title:</strong> Assessing pangolin scale morphology and genetic identifiability following varied processing treatments</p>
<p><strong>Article References:</strong> Khoo, M. D. Y., Yeo, D., Hiong, K. C., Ong, J., Wee, A., Chan, A. H. J., Li, S., Ping, X., Zeng, Y., Xie, R., How, C. B., Fernandez, C. J., Wong, A. M. S., &amp; Chang, S. F. (2026). Assessing pangolin scale morphology and genetic identifiability following varied processing treatments. <em>Discover Conservation, 3</em>(1), Article 33. <a href="https://doi.org/10.1007/s44353-026-00103-0" rel="noopener noreferrer">https://doi.org/10.1007/s44353-026-00103-0</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s44353-026-00103-0" rel="noopener noreferrer">10.1007/s44353-026-00103-0</a></p>
<p><strong>Keywords:</strong> pangolins, wildlife forensics, Sunda pangolin, illegal wildlife trade, DNA barcoding, traditional Chinese medicine, scale morphology, DNA degradation, cytochrome b, species identification, wildlife trafficking, conservation</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">195291</post-id>	</item>
	</channel>
</rss>
