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	<title>cervical cytology &#8211; Science</title>
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	<title>cervical cytology &#8211; Science</title>
	<link>https://scienmag.com</link>
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		<title>Uncertainty-aware multimodal model evaluated for cervical-cell classification</title>
		<link>https://scienmag.com/uncertainty-aware-multimodal-model-evaluated-for-cervical-cell-classification/</link>
		
		<dc:creator><![CDATA[Denise Maddox]]></dc:creator>
		<pubDate>Tue, 20 Oct 2026 18:52:05 +0000</pubDate>
				<category><![CDATA[Technology and Engineering]]></category>
		<category><![CDATA[adaptive]]></category>
		<category><![CDATA[cervical cytology]]></category>
		<category><![CDATA[clinical and genomic data integration in cancer diagnostics]]></category>
		<category><![CDATA[confidence-based selective prediction in screening]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[ensemble image encoders for pathology analysis]]></category>
		<category><![CDATA[evaluation of AI models for cervical cancer detection]]></category>
		<category><![CDATA[external validation]]></category>
		<category><![CDATA[Fusion]]></category>
		<category><![CDATA[fusion mechanisms in multimodal models]]></category>
		<category><![CDATA[graceful]]></category>
		<category><![CDATA[image classification]]></category>
		<category><![CDATA[limitations and challenges in multimodal medical AI]]></category>
		<category><![CDATA[model calibration]]></category>
		<category><![CDATA[model calibration in biomedical applications]]></category>
		<category><![CDATA[multimodal deep learning for cervical cell classification]]></category>
		<category><![CDATA[multimodal fusion]]></category>
		<category><![CDATA[performance metrics for cervical cytology models]]></category>
		<category><![CDATA[predictive entropy with Monte Carlo Dropout]]></category>
		<category><![CDATA[predictive uncertainty]]></category>
		<category><![CDATA[robust deep learning frameworks for uninformative data modalities]]></category>
		<category><![CDATA[synthetic genomic data]]></category>
		<category><![CDATA[uncertainty estimation in medical imaging]]></category>
		<category><![CDATA[Uncertainty-aware]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=320608</guid>

					<description><![CDATA[An abstract reports that an uncertainty-aware proof-of-concept model classified 6,849 cervical-cell images with an AUC-ROC of 0.993, but synthetic auxiliary data and a cross-dataset generalization gap limit its scope.]]></description>
										<content:encoded><![CDATA[<p>A proof-of-concept deep-learning framework combined image, clinical and genomic information to classify cervical cells while estimating predictive uncertainty. The abstract reports that, on a combined SIPaKMeD and Herlev benchmark of 6,849 cervical-cell images, the framework achieved an AUC-ROC of 0.993 (95% CI 0.988–0.997), with 97.08% accuracy, 98.07% sensitivity and 96.08% specificity. These findings were summarized from the study abstract rather than independently assessed from the full article.</p>
<p>The proposed architecture used an ensemble image encoder comprising ResNet50, DenseNet121 and EfficientNet-B0, together with dedicated clinical and genomic encoders. An adaptive fusion mechanism combined modality-specific predictions through convex weights driven by predictive entropy estimated with Monte Carlo Dropout. In tests where auxiliary modalities were uninformative, the framework was reported to suppress their influence and maintain identical test-set predictions across all image-containing configurations. A static equal-weight baseline, by comparison, had an AUC of 0.982 rather than 0.993.</p>
<p>The framework also produced well-calibrated probabilities in the reported evaluation, with a Brier score of 0.025 and expected calibration error of 0.014. Confidence-based selective prediction was described as showing potential for human-in-the-loop triage. This is a measured evaluation result, but the abstract does not establish improved clinical outcomes or demonstrate benefit in prospective screening.</p>
<p>Important limitations constrain the scope of the work. The study was explicitly presented as a proof-of-concept, and paired patient-level multimodal data were unavailable. Clinical features were therefore derived from an independent risk-factor cohort, while genomic features were synthetically generated. Cross-dataset transfer experiments showed a generalization gap, indicating that further external validation is needed. The reported performance came from cervical-cell image benchmarks and should not be interpreted as evidence that the full multimodal framework has been validated for routine patient screening.</p>
<p><strong>Subject of Research:</strong> Proof-of-concept evaluation of uncertainty-aware multimodal classification of cervical-cell images</p>
<p><strong>Article Title:</strong> Uncertainty-aware adaptive fusion with graceful degradation for trustworthy cervical cytology</p>
<p><strong>Article References:</strong> Chaabane, S. B., Bushnag, A., Oyouni, A. A. A., Massoudi, W., Abuzneid, S., &amp; Aluneizi, S. (2026). Uncertainty-aware adaptive fusion with graceful degradation for trustworthy cervical cytology. <em>Scientific Reports</em>. <a href="https://doi.org/10.1038/s41598-026-73797-w" rel="noopener noreferrer">https://doi.org/10.1038/s41598-026-73797-w</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1038/s41598-026-73797-w" rel="noopener noreferrer">10.1038/s41598-026-73797-w</a></p>
<p><strong>Keywords:</strong> cervical cytology, deep learning, multimodal fusion, predictive uncertainty, image classification, model calibration, synthetic genomic data, external validation, Uncertainty-aware, adaptive, fusion, graceful</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">320608</post-id>	</item>
		<item>
		<title>High-Risk HPV Genotypes Not Covered by Vaccines Dominate Cervical Infections in Lagos Women</title>
		<link>https://scienmag.com/high-risk-hpv-genotypes-not-covered-by-vaccines-dominate-cervical-infections-in-lagos-women/</link>
		
		<dc:creator><![CDATA[Kristina Jarvis]]></dc:creator>
		<pubDate>Wed, 14 Oct 2026 11:35:50 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[BMC Infectious Diseases]]></category>
		<category><![CDATA[cervical cancer]]></category>
		<category><![CDATA[cervical cancer in West Africa]]></category>
		<category><![CDATA[cervical cancer prevention strategies in Africa]]></category>
		<category><![CDATA[cervical cytology]]></category>
		<category><![CDATA[cervical infection epidemiology in Nigeria]]></category>
		<category><![CDATA[High-risk HPV genotypes in Lagos women]]></category>
		<category><![CDATA[HPV genotype distribution in developing countries]]></category>
		<category><![CDATA[HPV genotypes]]></category>
		<category><![CDATA[HPV vaccine coverage]]></category>
		<category><![CDATA[HPV vaccine coverage limitations]]></category>
		<category><![CDATA[HPV-35]]></category>
		<category><![CDATA[HPV-35 prevalence in Nigeria]]></category>
		<category><![CDATA[human papillomavirus]]></category>
		<category><![CDATA[impact of non-vaccine HPV types on cervical cancer]]></category>
		<category><![CDATA[implications for HPV vaccine redesign]]></category>
		<category><![CDATA[limitations of current HPV vaccines]]></category>
		<category><![CDATA[molecular diagnostics]]></category>
		<category><![CDATA[multiple HPV infections]]></category>
		<category><![CDATA[Nigeria]]></category>
		<category><![CDATA[regional HPV genotype diversity]]></category>
		<category><![CDATA[regional HPV genotype studies]]></category>
		<category><![CDATA[risk factors]]></category>
		<category><![CDATA[sub-Saharan Africa]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=270755</guid>

					<description><![CDATA[A study of 165 women in Lagos, Nigeria, found that high-risk HPV genotypes not fully covered by current vaccines, led by HPV-35, dominate cervical infections and are strongly linked to sexual behavior risk factors.]]></description>
										<content:encoded><![CDATA[<p>Cervical cancer remains one of the most formidable challenges in global oncology, ranking as the fourth most common cancer among women worldwide, and its primary driver is persistent infection with high-risk types of human papillomavirus. A new study conducted in Lagos, Nigeria, has now revealed a striking picture of which viral genotypes are actually circulating in this West African population, and the results carry uncomfortable implications for current vaccination strategies. Among 165 sexually active women recruited from a tertiary gynecology referral clinic, more than half carried at least one of the thirteen established high-risk HPV genotypes, and when five probable high-risk types were added to the analysis, the proportion of infected women climbed to just over seventy percent. The most frequently detected genotype was HPV-35, a type that is not fully covered by the vaccines most widely deployed in global immunization programs, a finding that the study&#8217;s authors argue should prompt a fundamental rethinking of region-specific vaccine design.</p>
<p>The research, published in BMC Infectious Diseases, was led by Oluwaseyi Sedowhe Ashaka of Caleb University in Lagos together with collaborators spanning Nigerian institutions including the Nigeria Centre for Disease Control and Prevention, Lagos University Teaching Hospital, the Nigerian Institute of Medical Research, and the University of Ilorin, along with partners at The University of Texas Rio Grande Valley in the United States. Recruitment took place between July 2017 and June 2018, and every participant underwent both conventional cervical cytology screening by Pap smear and molecular testing for HPV. The dual approach allowed the investigators to compare viral genotype distribution in women whose cervical cells appeared normal under the microscope with those whose smears showed abnormalities ranging from atypical squamous cells of undetermined significance to low-grade and high-grade squamous intraepithelial lesions, the cytological precursors of invasive cancer.</p>
<p>The molecular methodology at the heart of the study deserves particular attention because it goes beyond the detection limits of many routine screening assays. Rather than relying on a single amplification reaction, the team employed nested and multiplex polymerase chain reaction, a technique that uses two successive rounds of primer binding to boost sensitivity and then simultaneously amplifies genetic targets from eighteen distinct high-risk or probably high-risk HPV genotypes in the same reaction vessel. This nested multiplex PCR approach targeted thirteen established carcinogenic types, including the notorious HPV-16 and HPV-18, as well as five probable high-risk types such as HPV-82 and HPV-73, which are less commonly assayed in commercial test panels. The inclusion of these less-characterized genotypes proved consequential: HPV-82 was the second most prevalent type in the cohort at twenty percent, and HPV-73 ranked third at just over nine percent, figures that would likely have been missed by narrower testing strategies.</p>
<p>The headline genotype, HPV-35, was detected in 43.6 percent of the women tested, an extraordinarily high proportion that dwarfs the frequencies typically reported for this type in European and North American surveillance studies. HPV-35 belongs to the alpha-9 species of papillomaviruses, the same phylogenetic group as HPV-16, and it expresses the E6 and E7 oncoproteins that interfere with the p53 and retinoblastoma tumor suppressor pathways, the canonical molecular mechanism by which high-risk HPVs drive malignant transformation. Crucially, HPV-35 was the most frequent genotype across every cytological grade in the study, meaning it appeared not only in women with normal smears but also in those with progressively severe epithelial abnormalities. This pattern suggests that HPV-35 is not a benign passenger in this population but an active participant in the spectrum of cervical disease, consistent with accumulating evidence from other sub-Saharan African settings where non-16 and non-18 types carry a disproportionate share of the oncogenic burden.</p>
<p>Another notable finding was the frequency of mixed infections. Dual and multiple high-risk HPV infections were present in 34.5 percent of all participants, meaning roughly one in three women harbored two or more oncogenic genotypes simultaneously. Co-infection is biologically significant for several reasons. Multiple genotype infections can complicate viral competition and interference dynamics, may accelerate the progression of cervical lesions through additive or synergistic effects of different oncoproteins, and complicate genotype-specific surveillance because the presence of one dominant type can mask the detection of others depending on the assay used. In a clinical context, the high rate of multiple infections in Lagos underscores the limitations of screening algorithms designed around single-genotype detection and reinforces the case for broad-spectrum molecular panels in routine diagnostics.</p>
<p>The cytological findings provided an important clinical anchor for the molecular data. Abnormal cervical cytology was identified in 21.8 percent of the cohort, a substantial proportion reflecting the fact that participants were drawn from a gynecology referral clinic rather than a general population sample. Within this abnormal group, HPV-35 again emerged as the most frequent genotype across all grades of dysplasia, from low-grade squamous intraepithelial lesions to high-grade lesions. The persistence of a single non-vaccine genotype across the full cytological spectrum raises pointed questions about how well current screening and vaccination paradigms, which were largely calibrated on the epidemiology of HPV-16 and HPV-18, translate to populations where the genotype distribution is fundamentally different.</p>
<p>Beyond mapping the viral landscape, the study interrogated the behavioral and demographic risk factors associated with infection, using chi-square tests for initial comparisons and then multivariable logistic regression with Firth&#8217;s penalized-likelihood method to identify independent associations. This statistical approach is specifically designed for datasets in which some outcome categories contain few events, producing more reliable odds ratio estimates than standard maximum-likelihood regression when the data are sparse. Two factors emerged as independently associated with high-risk HPV infection after adjustment. A history of sexually transmitted infection nearly tripled the odds of carrying high-risk HPV, with an adjusted odds ratio of 3.27, while condom use was strongly protective, reducing the odds by more than eighty percent with an adjusted odds ratio of 0.19. Both associations were statistically robust, with confidence intervals that excluded the null value.</p>
<p>Equally instructive were the factors that did not retain statistical significance. Later sexual debut, defined in the study as first intercourse at age twenty-one or older, and a higher number of lifetime sexual partners both showed elevated odds ratios in the initial analysis, but these did not reach statistical significance after adjustment. Similarly, age, educational status, and marital status were not independently associated with infection once other variables were accounted for. This pattern suggests that in this Lagos cohort, the dynamics of viral transmission and clearance are shaped more directly by sexual behavior variables with clear mechanistic links to exposure, such as barrier protection and prior sexually transmitted infections indicating unprotected exposure, than by broader demographic categories. The strong protective effect of condom use aligns with the established biology of HPV transmission, which occurs through direct contact with infected epithelial surfaces, and it offers an immediately actionable target for public health messaging even in settings where vaccine coverage remains low.</p>
<p>The implications of the study extend well beyond Lagos. Most cervical cancer prevention programs worldwide rest on two pillars: vaccination against HPV-16 and HPV-18, the types responsible for the majority of cervical cancers globally, and cytological or molecular screening to detect precancerous lesions. The bivalent, quadrivalent, and nonavalent vaccines differ in the number of types they cover, with the nonavalent product adding HPV-31, 33, 45, 52, and 58 to the original pair, but none provides complete protection against HPV-35, HPV-73, or HPV-82. In a population where HPV-35 alone accounts for over forty percent of infections and the majority of detected genotypes fall outside even the broadest current vaccine formulation, the protective ceiling of existing immunization strategies is inherently limited. The authors argue that this mismatch makes a compelling case for region-specific vaccine development, potentially incorporating the genotypes that dominate African epidemiology, and for integrating molecular HPV genotyping into routine screening programs so that women carrying non-vaccine high-risk types are not falsely reassured.</p>
<p>The study also highlights the practical infrastructure needed to act on such findings. The molecular work relied on positive controls supplied by the WHO HPV LabNet laboratory for the African region at the University of Cape Town, illustrating the value of international laboratory networks in supporting genotype-level surveillance where commercial assay coverage is incomplete. With cervical cancer incidence and mortality in sub-Saharan Africa among the highest in the world, and screening coverage in many countries remaining far below the targets set by the World Health Organization&#8217;s global elimination strategy, data of this granularity are essential for calibrating local responses. The Lagos findings, derived from a carefully genotyped cohort with both normal and abnormal cytology, provide a template for the kind of evidence base that vaccine developers, screening program designers, and policymakers will need if the goal of eliminating cervical cancer as a public health problem is to be achieved on a timeline that matters for the generations of women currently at risk.</p>
<p><strong>Subject of Research:</strong> Distribution of high-risk human papillomavirus genotypes and associated risk factors among women in Lagos, Nigeria</p>
<p><strong>Article Title:</strong> Distribution of high-risk human papillomavirus genotypes and associated risk factors among women with normal and abnormal cervical cytology in Lagos, Nigeria</p>
<p><strong>Article References:</strong> Ashaka, O. S., Omoare, A. A., Oderinde, B. S., Okunade, K. S., James, A. B., Oladiji, F., Adeniji, K. A., Agbede, O. O., Banjo, A. A. F., Aina, K. O., Rodriguez, A. A., &amp; Roy, U. (2026). Distribution of high-risk human papillomavirus genotypes and associated risk factors among women with normal and abnormal cervical cytology in Lagos, Nigeria. <em>BMC Infectious Diseases</em>. <a href="https://doi.org/10.1186/s12879-026-14580-0" rel="noopener noreferrer">https://doi.org/10.1186/s12879-026-14580-0</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12879-026-14580-0" rel="noopener noreferrer">10.1186/s12879-026-14580-0</a></p>
<p><strong>Keywords:</strong> human papillomavirus, HPV-35, cervical cancer, cervical cytology, HPV genotypes, multiple HPV infections, risk factors, HPV vaccine coverage, molecular diagnostics, Nigeria, Sub-Saharan Africa, BMC Infectious Diseases</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">270755</post-id>	</item>
		<item>
		<title>AI Learns to Untangle Overlapping Cervical Cells in Pap Smears</title>
		<link>https://scienmag.com/ai-learns-to-untangle-overlapping-cervical-cells-in-pap-smears/</link>
		
		<dc:creator><![CDATA[Ophelia Keating]]></dc:creator>
		<pubDate>Fri, 25 Sep 2026 21:17:37 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[adapting]]></category>
		<category><![CDATA[AI-based cytology image processing]]></category>
		<category><![CDATA[BMC Medical Imaging]]></category>
		<category><![CDATA[cell boundary detection in cytology]]></category>
		<category><![CDATA[Cellpose-SAM]]></category>
		<category><![CDATA[Cellpose-SAM model adaptation]]></category>
		<category><![CDATA[cervical cancer screening]]></category>
		<category><![CDATA[cervical cancer screening automation]]></category>
		<category><![CDATA[cervical cell clump separation]]></category>
		<category><![CDATA[cervical cytology]]></category>
		<category><![CDATA[challenges in cytology image segmentation]]></category>
		<category><![CDATA[computer vision]]></category>
		<category><![CDATA[computer-aided cervical cancer diagnosis]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[fine-tuning]]></category>
		<category><![CDATA[instance segmentation]]></category>
		<category><![CDATA[instance segmentation in medical imaging]]></category>
		<category><![CDATA[medical image analysis for cancer detection]]></category>
		<category><![CDATA[Medical Imaging]]></category>
		<category><![CDATA[overlapping cervical cell segmentation]]></category>
		<category><![CDATA[Pap smear]]></category>
		<category><![CDATA[Pap smear image analysis]]></category>
		<category><![CDATA[parameter adaptation]]></category>
		<category><![CDATA[pathology image analysis]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=214574</guid>

					<description><![CDATA[Researchers fine-tuned the Cellpose-SAM model to separate overlapping cervical cells in Pap-smear images, achieving improved segmentation accuracy on an independent test set.]]></description>
										<content:encoded><![CDATA[<p>Cervical cancer screening depends on one of medicine&#8217;s most labor-intensive visual tasks: a trained cytologist or pathologist examines stained cells scraped from the cervix, hunting for the subtle nuclear and cytoplasmic changes that signal precancerous transformation. The Pap smear has saved countless lives since its introduction, but it is slow, subjective, and vulnerable to fatigue. For decades, researchers have tried to automate parts of this workflow, and for decades they have run into a deceptively simple problem: cervical cells rarely sit politely side by side on the slide. They clump, overlap, and pile on top of one another, blurring the very boundaries a computer needs to trace in order to measure and classify each cell.</p>
<p>A new study published in BMC Medical Imaging by Suxiang Yu, Xiaoqin Yang, Yihe Duan, Dun Hua, Bai Yun, Huimiao Sun, Lingling Zhang, Feihong Wu, Dandan Yang, and Xin Huang takes aim at exactly this problem. The team, spanning pathology departments and engineering schools in China, evaluated and adapted Cellpose-SAM, a modern generalist cell segmentation model, to the specific and stubborn challenge of instance segmentation in overlapping cervical cytology images. Their results, while modest in absolute terms, point to a practical lesson for the field: even powerful foundation models need careful, task-specific tuning before they can be trusted on the messy realities of clinical slides.</p>
<p>Cellpose-SAM itself represents an interesting convergence of two research threads. Cellpose, originally released in 2020, popularized a two-step approach to cell segmentation in which a neural network first predicts the flow of gradients from every pixel toward the center of its parent cell, and an algorithm then follows those flows to group pixels into individual instances. This design elegantly sidesteps the need for the network to label each cell with a unique identifier, which is notoriously difficult to train. The SAM in the name refers to the Segment Anything Model, a vision foundation model trained by Meta AI on an enormous corpus of natural images. By marrying SAM&#8217;s pretrained visual backbone to Cellpose&#8217;s flow-based decoding, Cellpose-SAM inherits strong generalization to cell types and imaging modalities it has never seen before, including microscopy styles far removed from its training distribution.</p>
<p>But strong generalization is not the same as optimal performance on any given task. As the authors note in the study, the default configuration of Cellpose-SAM may not be suited to densely overlapping cervical cytology images, where cell adhesion, weak cytoplasmic contrast, and ambiguous boundaries conspire to obscure individual cell structures. When two overlapping epithelial cells stain nearly identically and share a barely perceptible junction, the model must decide where one cell ends and the other begins, a judgment that even the underlying flow field may represent poorly without further training on comparable data.</p>
<p>To give the model that training, the researchers assembled a single-center retrospective dataset from the Fourth Central Hospital of Baoding in Hebei Province, China. The dataset consisted of 433 images of overlapping cervical cells, each accompanied by expert manual annotations that served as the ground truth against which the algorithm&#8217;s outputs were measured. These images were divided into training, validation, and independent test sets at a ratio of 70 percent, 10 percent, and 20 percent, respectively. The split is a standard but important design choice: the training set teaches the model, the validation set guides tuning decisions, and the test set, held completely apart from both, provides an honest estimate of how the adapted system performs on data it has never encountered during development.</p>
<p>The adaptation strategy had two complementary components. The first was fine-tuning, in which the pretrained Cellpose-SAM weights were updated on the cervical cytology training images, allowing the model&#8217;s internal representations to adjust to the specific staining patterns, cell morphologies, and clutter of Pap-smear preparations. The second was inference-parameter optimization, a step that is often overlooked but can be as consequential as retraining itself. Cellpose-SAM exposes several knobs at prediction time: the expected cell diameter, which calibrates the scale at which the network looks for objects; the flow threshold, which determines how strictly the gradient-following algorithm trusts its flow predictions when assembling cell instances; and the cell probability threshold, which decides how readily the model declares a pixel to belong to a cell at all. Rather than accepting defaults, the team systematically tuned these parameters on the validation set, using it as a proxy for the true target distribution and then freezing the chosen values for evaluation.</p>
<p>Performance was assessed on the independent test set using four established segmentation metrics. The Dice coefficient, which measures the harmonic mean of overlap between predicted and annotated regions, reached 0.8737 for the adapted model. Intersection over Union, a stricter spatial-overlap measure, came in at 0.7199. The Aggregated Jaccard Index, a metric designed specifically for instance-level segmentation because it penalizes both missed and spurious instances across a whole image, registered 0.7024. The error rate, which captures instances the model failed to segment correctly, was 0.1551. The authors performed statistical comparisons between the default and adapted configurations using paired image-level analysis, and the adapted model showed improved performance across these measures, suggesting better agreement with the expert manual annotations in the overlapping-cell regions.</p>
<p>The numbers deserve careful interpretation. A Dice coefficient of roughly 0.87 indicates substantial pixel-level agreement, and an IoU above 0.72 is respectable for a task where the ground truth itself is contested by virtue of ambiguous cell boundaries. The AJI of about 0.70, meanwhile, is the more sobering figure, because it aggregates performance at the level of whole instances: every cell the model misses entirely or invents from nothing drags the score down across the entire image. An error rate of about 15.5 percent means that roughly one in six or seven predicted instances does not match the annotation well. In other words, the adapted Cellpose-SAM is a capable assistant rather than a finished autonomous cytologist, and the gap between 0.87 pixel overlap and 0.70 instance accuracy quantifies precisely the residual difficulty of separating cells that touch and overlap.</p>
<p>What makes the study noteworthy methodologically is its insistence that off-the-shelf foundation models are starting points, not endpoints. The cervical cytology community has seen a wave of deep-learning screening tools, many of which treat segmentation as a solved problem and focus instead on classification of abnormalities. Yet if the segmentation stage silently merges overlapping cells or slices one cell into two, every downstream measurement, from nucleus-to-cytoplasm ratio to nuclear area, inherits that distortion. The Baoding team&#8217;s finding that simply tuning the cell diameter, flow threshold, and cell probability threshold on a small validation set yielded measurable gains over defaults suggests that laboratories adopting Cellpose-SAM or similar tools should budget time and annotation effort for exactly this kind of calibration, tailored to their staining protocols and scanner optics.</p>
<p>The authors are appropriately measured about the limits of their work. The dataset comprised 433 images from a single center, which raises questions about how well the adapted model would transfer to slides prepared with different stains, scanned on different instruments, or drawn from patient populations with different distributions of inflammation, atrophy, and glandular cells. They state explicitly that further external validation and broader benchmarking are required before clinical generalization can be established. The retrospective study was approved by the hospital&#8217;s ethics committee under approval number 2022011, conducted in accordance with the Declaration of Helsinki, and used de-identified, anonymized images, with the informed-consent requirement waived for the retrospective design. The work was funded by the S&amp;T Program of Hebei under project number 22377774D, and the authors declared no competing interests.</p>
<p>Still, the trajectory is easy to read. Foundation models pretrained on millions of natural images are rapidly becoming the default starting point for biomedical image analysis, and the interesting research questions are shifting from how to build such models to how to adapt them efficiently to narrow, high-stakes domains. Cervical screening is a particularly attractive target: it is a globally distributed task with a persistent shortage of trained cytologists, and the cost of a missed abnormality is measured in human lives. If modest fine-tuning and parameter tuning can push a generalist segmentation model to useful accuracy on the notoriously tangled cells of a Pap smear, the path from laboratory benchmark to screening-room assistance becomes considerably more concrete, and the 433 clumped, ambiguous, stubbornly overlapping cells of Baoding become a small but meaningful waypoint on that road.</p>
<p><strong>Subject of Research:</strong> Instance segmentation of overlapping cervical cells in Pap-smear images using adapted Cellpose-SAM</p>
<p><strong>Article Title:</strong> Adapting Cellpose-SAM for instance segmentation of overlapping cervical cells in Pap-smear images</p>
<p><strong>Article References:</strong> Yu, S., Yang, X., Duan, Y., Hua, D., Yun, B., Sun, H., Zhang, L., Wu, F., Yang, D., &amp; Huang, X. (2026). Adapting Cellpose-SAM for instance segmentation of overlapping cervical cells in Pap-smear images. <em>BMC Medical Imaging</em>. <a href="https://doi.org/10.1186/s12880-026-02845-8" rel="noopener noreferrer">https://doi.org/10.1186/s12880-026-02845-8</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12880-026-02845-8" rel="noopener noreferrer">10.1186/s12880-026-02845-8</a></p>
<p><strong>Keywords:</strong> Cellpose-SAM, cervical cytology, Pap smear, instance segmentation, deep learning, fine-tuning, medical imaging, computer vision, cervical cancer screening, parameter adaptation, BMC Medical Imaging, Adapting</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">214574</post-id>	</item>
		<item>
		<title>HPV Infection Affects Over One in Ten Women Screened in Northern China, Study Finds</title>
		<link>https://scienmag.com/hpv-infection-affects-over-one-in-ten-women-screened-in-northern-china-study-finds/</link>
		
		<dc:creator><![CDATA[Kristina Jarvis]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 19:42:39 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[cervical cancer]]></category>
		<category><![CDATA[cervical cancer screening strategies]]></category>
		<category><![CDATA[cervical cytology]]></category>
		<category><![CDATA[cervical cytology abnormalities]]></category>
		<category><![CDATA[cervical health examination in Chinese women]]></category>
		<category><![CDATA[cross-sectional study]]></category>
		<category><![CDATA[epidemiology of HPV in China]]></category>
		<category><![CDATA[genotype distribution]]></category>
		<category><![CDATA[high-risk HPV]]></category>
		<category><![CDATA[HPV DNA testing and cytology]]></category>
		<category><![CDATA[HPV genotypes HPV52]]></category>
		<category><![CDATA[HPV infection prevalence in women in northern China]]></category>
		<category><![CDATA[HPV prevalence]]></category>
		<category><![CDATA[HPV vaccination]]></category>
		<category><![CDATA[HPV16]]></category>
		<category><![CDATA[HPV52]]></category>
		<category><![CDATA[HPV58]]></category>
		<category><![CDATA[human papillomavirus]]></category>
		<category><![CDATA[impact of HPV vaccination in China]]></category>
		<category><![CDATA[large-scale cross-sectional study on HPV]]></category>
		<category><![CDATA[pre-vaccination HPV prevalence data]]></category>
		<category><![CDATA[public health implications of HPV vaccination]]></category>
		<category><![CDATA[Shanxi China]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=198036</guid>

					<description><![CDATA[A cross-sectional study of nearly 20,000 women in Shanxi, China, reports that high-risk HPV infection affects 10.9 percent of those screened, with HPV52, HPV16 and HPV58 predominating and HPV16/18 increasingly concentrated in high-grade cervical lesions.]]></description>
										<content:encoded><![CDATA[<p>A large cross-sectional study from Shanxi Province in northern China has provided one of the most detailed baselines yet of human papillomavirus (HPV) infection and cervical cytological abnormalities among women attending routine health examinations. Drawing on clinical data collected from 19,384 women between January 2021 and December 2024, researchers affiliated with Shanxi Medical University found that high-risk HPV prevalence stood at 10.9 percent, with HPV52, HPV16 and HPV58 emerging as the most frequently detected genotypes. The findings arrive at a pivotal moment: in November 2025, HPV vaccination was incorporated into China&#8217;s national immunization programme, and robust pre-vaccination epidemiological data of this kind are exactly what public health authorities need to measure the vaccine&#8217;s downstream impact and to refine screening strategies.</p>
<p>The study, published as an open-access research article in Virology Journal, is notable for combining HPV DNA testing with concurrent cervical cytology in a single, large cohort. Women undergoing routine health examinations at participating facilities provided cervical samples for HPV genotyping and ThinPrep cytologic testing. The cohort had a median age of 42 years, with an interquartile range of 36 to 51 years, placing most participants squarely within the age band where cervical cancer screening is most actively recommended. By pairing molecular virology with cytological classification, the researchers were able to map how individual viral genotypes distribute themselves across the spectrum of cervical abnormalities, from benign findings to high-grade lesions.</p>
<p>HPV is a double-stranded DNA virus with more than 200 known genotypes, of which roughly a dozen, designated high-risk types, are established causes of cervical cancer. Persistent infection with HPV16 and HPV18 accounts for the majority of cervical cancer cases worldwide, which is why these two genotypes anchor the bivalent and quadrivalent vaccines, while the nonavalent formulation extends coverage to HPV31, 33, 45, 52 and 58. The Shanxi data confirm that the regional genotype landscape does not perfectly mirror the global one. HPV52 was the single most prevalent high-risk genotype at 2.3 percent, ahead of HPV16 and HPV58, each at 1.7 percent. Combined prevalence of HPV16 and HPV18 was 2.3 percent, while the nine genotypes covered by the nonavalent vaccine collectively accounted for 7.4 percent of infections, meaning roughly two-thirds of high-risk infections in this population fall within the nonavalent vaccine&#8217;s protective umbrella.</p>
<p>Beyond genotype frequencies, the researchers used multivariable logistic regression to isolate risk factors associated with high-risk HPV infection. Age emerged as a strong and independent determinant. Compared with women aged 20 to 35 years, those aged 56 to 65 years had roughly twice the odds of carrying a high-risk infection, with an adjusted odds ratio of 2.0 and a 95 percent confidence interval of 1.6 to 2.3. This pattern is consistent with a recognized second peak of HPV prevalence among older women, often attributed to reactivation of previously acquired latent infections, declining immune surveillance after menopause, or cohort effects related to sexual behavior and screening history in older generations. Marital status also carried a signal: married women had about half the odds of high-risk HPV infection compared with unmarried women, an adjusted odds ratio of 0.5 with a confidence interval of 0.4 to 0.7, a finding the authors report without overinterpreting its behavioral or social underpinnings.</p>
<p>Cytological abnormalities were far less common than viral infections overall. Abnormal cytology was detected in 2.1 percent of the 19,384 participants, spanning the full range of the Bethesda classification system, from atypical squamous cells of undetermined significance through low-grade and high-grade squamous intraepithelial lesions. The relatively low rate of abnormal cytology reflects the natural history of HPV disease: most infections are transient and cleared by cell-mediated immunity within one to two years, and only a small fraction of persistent infections progress through cytological change toward malignancy. This biological bottleneck is precisely what makes genotype-specific surveillance valuable, because identifying which viral types are enriched among abnormal cytology results sharpens the predictive value of screening.</p>
<p>The most striking analytical finding concerns how genotype composition shifts with lesion severity. Among HPV-positive women, the prevalence of HPV16 and HPV18 rose significantly as cytological grade increased, with a 3.4-fold higher odds of these two genotypes in atypical squamous cells cannot exclude high-grade lesion or high-grade squamous intraepithelial lesion categories compared with low-grade lesions, at an odds ratio of 3.4 and a confidence interval of 1.0 to 11.5. The genotypes HPV31, 33, 45, 52 and 58 showed a moderate but statistically non-significant increase across severity strata, with an odds ratio of 1.8 and a confidence interval spanning 0.6 to 5.6. Meanwhile, high-risk genotypes outside this seven-type group actually declined in prevalence as lesions became more severe, with an odds ratio of 0.6 and a confidence interval of 0.1 to 2.2. In other words, the viral population underlying mild abnormalities is more heterogeneous, whereas severe lesions concentrate around the genotypes with established oncogenic potency.</p>
<p>From a virological standpoint, this gradient makes mechanistic sense. HPV16, and to a lesser extent HPV18, carry sequence variations in the E6 and E7 oncogenes and in regulatory regions that favor expression of proteins which degrade the p53 and retinoblastoma tumor suppressor pathways. Viruses equipped with these features are more likely to escape cell-cycle control long enough for a lesion to progress, which is why they dominate the high-grade end of the spectrum even when other genotypes are more common among transient infections. HPV52 and HPV58, both classified as high-risk and both notably prevalent in East Asian populations, appear to occupy an intermediate position, contributing substantially to infection burden and to lesions, but with a weaker per-infection association with severe cytology than HPV16/18 in this dataset.</p>
<p>The timing of these findings amplifies their policy relevance. China&#8217;s decision to introduce HPV vaccination into its national immunization programme in November 2025 created an urgent need for baseline genotype distribution data across representative provinces. Without such baselines, it would be difficult to distinguish vaccine-driven changes in genotype prevalence from natural fluctuations. The Shanxi results suggest that bivalent and quadrivalent vaccination, which target HPV16 and HPV18 plus HPV6 and 11 in the quadrivalent formulation, will directly address only about one-fifth of the high-risk infections observed here, while nonavalent vaccination would cover roughly two-thirds. At the same time, the significant enrichment of HPV16/18 among high-grade lesions means those two genotypes still account for a disproportionate share of the abnormalities most likely to progress toward cancer, so even narrower vaccines should deliver outsized reductions in cancer incidence.</p>
<p>The authors emphasize that their data support genotype-specific risk assessment as a pillar of future cervical cancer prevention in China. As vaccination scales up, screening programmes may need to adapt, potentially shifting toward HPV-based primary screening with genotyping for HPV16 and HPV18, followed by reflex cytology, a triage algorithm already adopted in many high-income settings. The observed age-related rise in prevalence also cautions against focusing vaccination and screening exclusively on younger cohorts; older women, who are largely beyond catch-up vaccination eligibility, will continue to carry a substantial burden of infection for decades and will remain dependent on effective cytological or molecular screening. The finding that married women had lower infection odds, whatever its underlying behavioral explanation, may help target health education and screening outreach toward demographic groups with higher observed risk.</p>
<p>As with all cross-sectional designs, the study captures a single snapshot in time and cannot establish whether infections preceded cytological changes, nor can it follow individuals to confirm clearance or progression. The participant pool, drawn from women presenting for routine health examinations, may also skew toward populations with better healthcare access than the general provincial population. Nevertheless, with nearly twenty thousand paired HPV and cytology results, the study offers an unusually granular portrait of HPV epidemiology in a region of China where such data had been limited. As the national vaccination programme matures, repeated iterations of this kind of surveillance in Shanxi and comparable provinces will be essential for verifying whether the vaccine is bending the genotype distribution curve, reducing cytological abnormalities, and ultimately accelerating China&#8217;s progress toward the World Health Organization&#8217;s cervical cancer elimination targets.</p>
<p><strong>Subject of Research:</strong> Prevalence, genotype distribution and risk factors of human papillomavirus infection and cervical cytological abnormalities among women in Shanxi, China</p>
<p><strong>Article Title:</strong> Prevalence and risk factors of human papillomavirus infection and cervical cytological lesions among women in Shanxi, China: a cross-sectional study</p>
<p><strong>Article References:</strong> Ge, S., Gao, H., Wang, J., Guo, S., Chang, Y., Qi, Y., Han, J., Jia, Y., Dong, J., &amp; Wei, F. (2026). Prevalence and risk factors of human papillomavirus infection and cervical cytological lesions among women in Shanxi, China: a cross-sectional study. <em>Virology Journal</em>. <a href="https://doi.org/10.1186/s12985-026-03300-4" rel="noopener noreferrer">https://doi.org/10.1186/s12985-026-03300-4</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12985-026-03300-4" rel="noopener noreferrer">10.1186/s12985-026-03300-4</a></p>
<p><strong>Keywords:</strong> human papillomavirus, HPV prevalence, HPV52, HPV16, HPV58, cervical cytology, cervical cancer, genotype distribution, high-risk HPV, cross-sectional study, Shanxi China, HPV vaccination</p>
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