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	<title>cancer prognosis &#8211; Science</title>
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	<title>cancer prognosis &#8211; Science</title>
	<link>https://scienmag.com</link>
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		<title>Low Muscle Mass Emerges as a Powerful Predictor of Death in Cancer Patients</title>
		<link>https://scienmag.com/low-muscle-mass-emerges-as-a-powerful-predictor-of-death-in-cancer-patients/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sun, 13 Sep 2026 01:54:55 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[ASMI]]></category>
		<category><![CDATA[body composition]]></category>
		<category><![CDATA[body composition in oncology]]></category>
		<category><![CDATA[body weight vs muscle mass in cancer prognosis]]></category>
		<category><![CDATA[cancer mortality]]></category>
		<category><![CDATA[cancer patient prognosis]]></category>
		<category><![CDATA[cancer prognosis]]></category>
		<category><![CDATA[cancer survivors]]></category>
		<category><![CDATA[cardiovascular mortality]]></category>
		<category><![CDATA[impact of body composition on cardiovascular death]]></category>
		<category><![CDATA[importance of appendicular skeletal muscle mass]]></category>
		<category><![CDATA[low muscle mass]]></category>
		<category><![CDATA[low muscle mass and cancer survival]]></category>
		<category><![CDATA[muscle mass as predictor of mortality]]></category>
		<category><![CDATA[nationwide cohort study]]></category>
		<category><![CDATA[nationwide health data cancer study]]></category>
		<category><![CDATA[obesity paradox]]></category>
		<category><![CDATA[prognostic tools in oncology]]></category>
		<category><![CDATA[respiratory failure risk in cancer patients]]></category>
		<category><![CDATA[respiratory mortality]]></category>
		<category><![CDATA[sarcopenia]]></category>
		<category><![CDATA[sarcopenic obesity]]></category>
		<category><![CDATA[significance of skeletal muscle in cancer outcomes]]></category>
		<category><![CDATA[South Korea cancer health data analysis]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=200608</guid>

					<description><![CDATA[A nationwide cohort study of over 635,000 South Korean cancer patients found that low muscle mass independently raised the risk of death from all causes, with the highest mortality seen in patients who combined muscle depletion with obesity.]]></description>
										<content:encoded><![CDATA[<p>A sweeping analysis of more than 635,000 cancer patients in South Korea has delivered one of the clearest signals yet that what lies beneath the scale matters far more than the number itself. Researchers drawing on nationwide health insurance and cancer registry data found that people with low muscle mass faced a 25 percent higher risk of death from any cause after a cancer diagnosis, and the excess risk extended well beyond the cancer itself. Cardiovascular deaths were nearly half again as likely, and respiratory deaths were more than twice as common among patients in the lowest quartile of appendicular skeletal muscle mass. The findings, published in Cancer Causes &amp; Control, challenge the long-standing habit of judging prognosis by body weight alone and suggest that body composition may be one of the most underused prognostic tools in oncology.</p>
<p>The study, led by Dagyeong Lee of Wonkwang University Sanbon Hospital and Sungkyunkwan University, together with biostatistician Kyungdo Han of Soongsil University and Dong Wook Shin of Samsung Medical Center, exploited a uniquely rich data infrastructure. South Korea&#8217;s National Health Insurance Service requires nearly all residents to attend periodic health screenings, during which body measurements and blood tests are collected, and the national cancer registry captures virtually every diagnosed malignancy in the country. By linking these systems, the team assembled a cohort of 635,867 adults who had been diagnosed with cancer and who had body composition data available around the time of diagnosis, allowing mortality outcomes to be tracked with unusual statistical power.</p>
<p>The technical backbone of the analysis was the appendicular skeletal muscle mass index, or ASMI, an estimate of the muscle contained in the arms and legs normalized to body size. Rather than relying on expensive imaging for every participant, the researchers used validated prediction equations that incorporate anthropometric measurements, serum creatinine levels and lifestyle factors, an approach previously validated in Korean adults. Patients falling in the lowest quartile of ASMI were classified as having low muscle mass, a definition aligned with the framework used by the Asian Working Group for Sarcopenia. Obesity was assessed two ways: a body mass index of 25 kilograms per square meter or higher, following Asia-Pacific criteria, and abdominal obesity defined as a waist circumference of at least 90 centimeters in men and 85 centimeters in women.</p>
<p>Using Cox proportional hazards regression, the team calculated adjusted hazard ratios that accounted for a broad range of potential confounders, including age, sex, smoking status, alcohol consumption, physical activity, income, comorbid conditions and cancer characteristics. Compared with patients in the highest ASMI quartile, those with low muscle mass showed a 25 percent higher risk of all-cause mortality, a 21 percent higher risk of dying specifically from cancer, a 49 percent higher risk of cardiovascular death and a startling 126 percent higher risk of respiratory death. The dose-response pattern was consistent: the less muscle a patient carried, the greater the mortality risk across every category examined.</p>
<p>Perhaps the most provocative result concerned the interaction between muscle and fat. Obesity, which is often assumed to be uniformly harmful in cancer patients, was actually associated with modestly lower mortality than non-obese status in this cohort, echoing the so-called obesity paradox reported in several cancer populations. But when low muscle mass and obesity coexisted, the protective veneer vanished. Patients with both conditions had the highest risks of all, with a 22 percent elevation in all-cause mortality and a 22 percent elevation in cancer-specific mortality compared with their counterparts. In other words, carrying extra fat did not rescue patients who lacked muscle; it appeared to compound their vulnerability.</p>
<p>This combination, often called sarcopenic obesity, has been recognized as a distinct clinical entity by international consensus statements from ESPEN and EASO in Europe and by an Asia-Oceania consortium, but its prognostic weight has been difficult to quantify because most prior studies were small, single-center or limited to specific tumor types. Meta-analyses of sarcopenia in solid tumors, including work in pancreatic, esophageal, lung and breast cancers, have consistently flagged poor outcomes, yet the new study is among the first to dissect cause-specific mortality at nationwide scale. By separating deaths due to cancer, cardiovascular disease and respiratory disease, the researchers revealed that muscle depletion is not merely a marker of advanced malignancy but a systemic risk factor operating across multiple organ systems.</p>
<p>The biological explanations are plausible and varied. Skeletal muscle is not an inert reservoir of protein; it is a metabolically active tissue that regulates glucose disposal, secretes anti-inflammatory myokines during contraction and serves as the body&#8217;s main amino acid store during illness. Cancer cachexia, the syndrome of muscle wasting that accompanies many malignancies, disrupts mitochondrial dynamics and promotes inflammation within muscle fibers, and low muscle mass is closely associated with elevated inflammatory markers such as erythrocyte sedimentation rate and low albumin. Depleted muscle also alters the pharmacokinetics of chemotherapy, potentially increasing toxicity, and predicts postoperative complications including pulmonary failure after esophagectomy and poor long-term outcomes in rectal cancer.</p>
<p>The respiratory findings deserve particular attention. Sarcopenia affects the diaphragm and intercostal muscles, compromising ventilatory capacity and cough strength, which helps explain why patients with low muscle mass were more than twice as likely to die from respiratory causes. Studies of cancer cachexia in animal models have documented diaphragm and ventilatory dysfunction, and clinical work has linked low muscle mass to severe dysphagia, raising aspiration risk. Meanwhile, the cardiovascular signal aligns with a growing literature showing that cardiovascular disease is a leading cause of death among long-term cancer survivors, driven partly by shared risk factors and partly by cardiotoxic treatments such as anthracycline chemotherapy, whose effects may be amplified in patients with depleted physiological reserve.</p>
<p>The authors emphasize that the practical message is not simply to gain weight but to build and preserve muscle. Clinical guidelines from the American Cancer Society already recommend that survivors maintain healthy weight through nutrition and physical activity, and randomized trials of combined aerobic and resistance training, along with dietary interventions, have shown meaningful improvements in body composition and cardiometabolic risk in patients with cancer. What the new study adds is a rationale for making muscle mass itself a routine clinical measurement at diagnosis, rather than an afterthought. Because the ASMI estimate can be derived from simple measurements already collected in health screenings, the barrier to implementation is low, particularly in health systems with structured screening programs.</p>
<p>Limitations remain. The cohort was exclusively Korean, and muscle mass thresholds and obesity criteria differ across populations, so the absolute risks may not translate directly to other ethnic groups. The prediction equations used to estimate ASMI, while validated, are less precise than direct imaging with computed tomography or dual-energy X-ray absorptiometry, and residual confounding by cancer stage, treatment intensity and unmeasured lifestyle factors cannot be excluded. The observational design means causality cannot be proven. Still, with more than 635,000 patients and consistent, graded associations across every cause of death examined, the study makes a compelling case that the scale tells only half the story. For oncologists and survivors alike, the takeaway is increasingly clear: in the fight against cancer, muscle is not optional equipment, and protecting it may be one of the most actionable steps available for extending survival.</p>
<p><strong>Subject of Research:</strong> The association of low muscle mass and obesity with cause-specific mortality in cancer patients</p>
<p><strong>Article Title:</strong> Low muscle mass, obesity, and cause-specific mortality in cancer patients: a nationwide cohort study</p>
<p><strong>Article References:</strong> Lee, D., Kim, B., Jung, K.-W., Nam, G. E., Rhee, S. Y., Kim, S., Chun, S., Cho, I. Y., Han, K., &amp; Shin, D. W. (2026). Low muscle mass, obesity, and cause-specific mortality in cancer patients: a nationwide cohort study. <em>Cancer Causes &amp;amp; Control, 37</em>(10), Article 156. <a href="https://doi.org/10.1007/s10552-026-02244-y" rel="noopener noreferrer">https://doi.org/10.1007/s10552-026-02244-y</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s10552-026-02244-y" rel="noopener noreferrer">10.1007/s10552-026-02244-y</a></p>
<p><strong>Keywords:</strong> low muscle mass, sarcopenia, sarcopenic obesity, cancer mortality, obesity paradox, body composition, cancer survivors, cardiovascular mortality, respiratory mortality, nationwide cohort study, ASMI, cancer prognosis</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">200608</post-id>	</item>
		<item>
		<title>Temporal Muscle Thickness Does Not Predict Survival in Older Brain Cancer Patients</title>
		<link>https://scienmag.com/temporal-muscle-thickness-does-not-predict-survival-in-older-brain-cancer-patients/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 14:05:06 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[brain metastases]]></category>
		<category><![CDATA[cachexia]]></category>
		<category><![CDATA[cancer prognosis]]></category>
		<category><![CDATA[Cancer Reports]]></category>
		<category><![CDATA[computed tomography]]></category>
		<category><![CDATA[CT imaging biomarkers]]></category>
		<category><![CDATA[elderly cancer patients]]></category>
		<category><![CDATA[frailty biomarkers]]></category>
		<category><![CDATA[muscle reserve assessment]]></category>
		<category><![CDATA[muscle wasting in cancer]]></category>
		<category><![CDATA[older patients]]></category>
		<category><![CDATA[prognostic indicators in metastatic brain cancer]]></category>
		<category><![CDATA[prognostication]]></category>
		<category><![CDATA[radiotherapy]]></category>
		<category><![CDATA[radiotherapy in older adults]]></category>
		<category><![CDATA[sarcopenia]]></category>
		<category><![CDATA[sarcopenia and cachexia]]></category>
		<category><![CDATA[stereotactic radiotherapy]]></category>
		<category><![CDATA[survival]]></category>
		<category><![CDATA[survival prediction in brain cancer]]></category>
		<category><![CDATA[temporal muscle thickness]]></category>
		<category><![CDATA[Whole Brain Radiotherapy]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=195043</guid>

					<description><![CDATA[A Finnish study of 249 patients aged 70 or older finds that temporal muscle thickness measured on CT is not an independent predictor of survival in brain metastasis patients treated with radiotherapy.]]></description>
										<content:encoded><![CDATA[<p>A thick temple may look like a trivial detail on a head scan, but in recent years radiologists have taken the temporalis muscle—the fan-shaped muscle of chewing that sits just beneath the scalp at the side of the skull—seriously as a window into the body&#8217;s overall muscle reserves. Because the temporalis thins along with the rest of the skeleton in wasting states such as sarcopenia and cachexia, its thickness on routine imaging has been proposed as a cheap, widely available marker of frailty and a possible predictor of how long cancer patients will live. A new study from Finland, however, delivers a cautionary message: in older patients with brain metastases undergoing radiation therapy, this seemingly promising biomarker does not hold up as an independent prognostic factor.</p>
<p>Researchers at Tampere University Hospital set out to answer a question that had not been addressed before: whether temporal muscle thickness, or TMT, measured on ordinary computed tomography scans, could predict survival in patients aged 70 or older who received brain radiotherapy for metastatic cancer. The question matters because prognostication in this population is exceptionally difficult and exceptionally important. Brain metastases affect an estimated 10 to 40 percent of patients with solid tumors, and population studies place the incidence between 8.3 and 14.3 per 100,000 people, a figure that almost certainly underestimates the true burden because not all cases are registered. Median survival across the field ranges from as little as two months to 21 months depending on the primary cancer, and for patients over 65, Surveillance, Epidemiology, and End Results data indicate a median survival of four months or less for nearly all common malignancies, including breast, colorectal, esophageal, renal, and lung cancer and melanoma.</p>
<p>Accurate prognostic tools would allow clinicians to tailor treatment intensity intelligently. Patients with a favorable outlook might benefit from more aggressive interventions, while those expected to survive only weeks could be spared the burdens of hospitalization, repeated radiotherapy sessions, or chemotherapy in the final weeks of life, interventions that may degrade quality of life without meaningfully extending it. Honest prognostic information also underpins shared decision-making, giving patients and families a realistic basis on which to weigh intensive treatment against palliative care. The Tampere team reasoned that if a simple measurement already embedded in the treatment-planning scan could sharpen these predictions, it would be a genuinely useful clinical instrument.</p>
<p>The study, published in Cancer Reports, took the form of a retrospective cohort analysis of consecutive patients aged 70 years or older who underwent brain radiotherapy, with or without prior surgical resection, for brain metastases between 2014 and 2022. From the hospital&#8217;s electronic radiotherapy database, 249 patients met the inclusion criteria: 136 men with a mean age of 76.0 years and 113 women with a mean age of 76.4 years. Lung cancer dominated the cohort, accounting for 113 patients or 45.4 percent, followed by breast cancer with 29 patients and melanoma with 27. Most participants, 226 in total, received radiotherapy alone, split between whole-brain radiotherapy, given to 151 patients, and stereotactic radiotherapy, delivered to 98, while 23 patients underwent surgical resection followed by postoperative radiation.</p>
<p>Measuring the temporalis muscle requires surprising methodological care. A single observer, blinded to patient outcomes, assessed TMT on each patient&#8217;s first radiotherapy planning head CT, or on a diagnostic CT performed within the preceding month. The measurement plane had to be oriented parallel to the falx cerebri, the membrane dividing the brain&#8217;s hemispheres, and tangential to the floor of the middle cranial fossa, with the image windowed to a narrow setting of 80 Hounsfield units width and 40 length to sharpen the muscle&#8217;s boundaries. On the first axial slice above the bony orbit, a tangent line was drawn from the muscle&#8217;s anterior attachment to the skull, and thickness was recorded at the muscle&#8217;s thickest point perpendicular to that line, deliberately excluding fat, fascia, and blood vessels. The average of left and right measurements was used in the analyses. To confirm the technique&#8217;s reliability, a second observer independently measured a random sub-cohort of 19 patients, and the agreement between readers was excellent, with an intraclass correlation coefficient of 0.942 for single measurements and 0.970 for averages—figures indicating that the measurement itself is robust and reproducible.</p>
<p>Because men naturally have thicker temporal muscles than women, the researchers derived sex-specific thresholds for low TMT by maximizing Youden&#8217;s index, a statistical measure balancing sensitivity and specificity, for three-month survival. The resulting cut-offs were 4.3 millimeters for men, with 46.7 percent sensitivity and 74.6 percent specificity, and 3.975 millimeters for women, with 64.6 percent sensitivity and 49.2 percent specificity. These thresholds are notably lower than those reported in earlier studies of younger patients, a difference the authors attribute to the advanced age of their cohort, in which temporal muscle wasting is already widespread. By these criteria, 35.3 percent of the men and 56.6 percent of the women had low temporal muscle thickness.</p>
<p>The survival picture in the cohort was stark. Median overall survival was just 90 days, or roughly three months, and by the one-year mark 86.7 percent of the patients had died. Patients with normal TMT did live somewhat longer on average than those with low TMT, with a median of 103 days versus 75 days, and in univariate analyses low TMT was significantly associated with worse survival at three months, with a hazard ratio of 1.54, and at six months, with a hazard ratio of 1.41. At one month and twelve months, no association reached statistical significance. But the crucial test came when the researchers adjusted their models for other clinical variables: age, body mass index, surgical treatment, and type of radiotherapy. Once these factors were accounted for, the relationship between TMT and survival evaporated entirely at every time horizon, with the adjusted three-month hazard ratio falling to 1.40 and losing significance.</p>
<p>What did predict survival, independently, were other clinical variables. Receiving whole-brain radiotherapy rather than stereotactic radiotherapy carried a substantially higher risk of death at every time point, with an adjusted hazard ratio of 5.98 for one-month survival and approximately 2.3 at the longer horizons. This likely reflects treatment selection rather than harm: whole-brain radiotherapy is generally reserved for patients with multiple metastases and poorer prognosis, while stereotactic techniques are favored for those with limited, more favorable disease. Similarly, patients who did not undergo surgical resection had markedly higher mortality across all time frames, since surgery is typically offered only to younger patients with solitary lesions and better expected outcomes. Higher body mass index was protective for one-month survival, with a hazard ratio of 0.31, and advancing age independently worsened six- and twelve-month survival. The authors are candid that these patterns largely mirror the realities of clinical decision-making.</p>
<p>The contrast with previous research is instructive. Of six earlier studies evaluating TMT in patients with brain metastases, three found that low thickness predicted shorter survival, while others found no association once confounders were considered. Crucially, those studies examined patients on average more than a decade younger, with median survival extending from three to eleven months, and several included only surgically treated patients. The Tampere cohort, by contrast, was older, sicker, and predominantly managed with radiotherapy alone. The researchers also tested whether TMT predicted survival within their largest tumor subgroup, the 113 lung cancer patients, and found no significant association at any time point, which discouraged further subgroup analyses. Additional limitations deserve mention: performance status, number of brain lesions, intracranial tumor volume, extracranial disease status, and systemic therapy were not incorporated into the models, and the derived sex-specific cut-offs may risk overfitting, making external replication essential.</p>
<p>The study&#8217;s conclusion is refreshingly direct: temporal muscle thickness should not be regarded as a prognostic factor in patients aged 70 or older with brain metastases treated with radiotherapy. The finding is a valuable corrective to a growing enthusiasm for imaging-derived body-composition markers, reminding clinicians and researchers that a measurement can be technically reliable, easily obtained, and biologically plausible yet still fail to add independent predictive value in the population that matters. In very old, profoundly ill patients whose median survival is measured in weeks, disease aggressiveness and treatment selection appear to overwhelm any signal carried by skeletal muscle reserves. For this vulnerable group, prognostic conversations must continue to rest on established clinical variables, while the search for better tools goes on.</p>
<p><strong>Subject of Research:</strong> Temporal muscle thickness as a prognostic marker for survival in older patients with brain metastases treated with radiotherapy</p>
<p><strong>Article Title:</strong> Association Between Temporal Muscle Thickness and Survival in Older Patients With Brain Metastases Undergoing Radiation Therapy</p>
<p><strong>Article References:</strong> Pikkarainen, L., Korhonen, T. K., Tolonen, A., Pesonen, E. K., Hernandez, N., Skyttä, T., &amp; Arponen, O. (2026). Association Between Temporal Muscle Thickness and Survival in Older Patients With Brain Metastases Undergoing Radiation Therapy. <em>Cancer Reports, 9</em>(9), Article e70671. <a href="https://doi.org/10.1002/cnr2.70671" rel="noopener noreferrer">https://doi.org/10.1002/cnr2.70671</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1002/cnr2.70671" rel="noopener noreferrer">10.1002/cnr2.70671</a></p>
<p><strong>Keywords:</strong> temporal muscle thickness, brain metastases, radiotherapy, survival, sarcopenia, cachexia, prognostication, computed tomography, whole-brain radiotherapy, stereotactic radiotherapy, older patients, Cancer Reports</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">195043</post-id>	</item>
		<item>
		<title>AI Maps a Hidden Neutrophil Niche in Lung Cancer and Flags a New Drug Target</title>
		<link>https://scienmag.com/ai-maps-a-hidden-neutrophil-niche-in-lung-cancer-and-flags-a-new-drug-target/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Sat, 12 Sep 2026 12:42:29 +0000</pubDate>
				<category><![CDATA[Cancer]]></category>
		<category><![CDATA[cancer prognosis]]></category>
		<category><![CDATA[CRISPR gene essentiality screens in cancer]]></category>
		<category><![CDATA[deep learning]]></category>
		<category><![CDATA[deep learning in tumor microenvironment analysis]]></category>
		<category><![CDATA[epithelial-mesenchymal transition]]></category>
		<category><![CDATA[epithelial–mesenchymal transition in lung adenocarcinoma]]></category>
		<category><![CDATA[Geneformer]]></category>
		<category><![CDATA[identification of neutrophil-associated mesenchymal niche]]></category>
		<category><![CDATA[immune cell heterogeneity in lung tumors]]></category>
		<category><![CDATA[immunotherapy response]]></category>
		<category><![CDATA[implications]]></category>
		<category><![CDATA[lung adenocarcinoma]]></category>
		<category><![CDATA[lung cancer immune microenvironment]]></category>
		<category><![CDATA[neutrophil role in tumor progression]]></category>
		<category><![CDATA[novel therapeutic targets for lung adenocarcinoma]]></category>
		<category><![CDATA[OSM signaling]]></category>
		<category><![CDATA[SEC61G]]></category>
		<category><![CDATA[Single-Cell RNA Sequencing]]></category>
		<category><![CDATA[single-cell RNA sequencing in cancer research]]></category>
		<category><![CDATA[Spatial transcriptomics]]></category>
		<category><![CDATA[spatial transcriptomics in lung cancer]]></category>
		<category><![CDATA[tumor microenvironment]]></category>
		<category><![CDATA[tumor-associated macrophages and SPP1 protein]]></category>
		<category><![CDATA[tumor-associated neutrophils]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=194339</guid>

					<description><![CDATA[A deep learning pipeline integrating single-cell and spatial transcriptomics has revealed an OSM-primed neutrophil niche that sustains aggressive mesenchymal tumor states in lung adenocarcinoma and nominated the translocon gene SEC61G as a candidate dependency.]]></description>
										<content:encoded><![CDATA[<p>Lung adenocarcinoma is the most common form of lung cancer, and one of its most dangerous tricks is a process called epithelial–mesenchymal transition, in which tumor cells abandon their epithelial identity, take on invasive mesenchymal characteristics, and become harder to treat and more likely to spread. For years, researchers studying the cellular ecosystems that drive this plasticity have focused heavily on a particular population of immune cells: macrophages that carry the protein SPP1. Neutrophils, the abundant white blood cells that often swarm into tumors, remained largely in the shadows of these analyses. A new study published in Cancer Immunology, Immunotherapy changes that picture, using an elaborate deep learning pipeline to reveal a neutrophil-associated mesenchymal niche in lung adenocarcinoma and to nominate a candidate tumor dependency that could point toward new therapeutic strategies.</p>
<p>The research, led by Ruizhe Huang, Zhiyi Liu and Yawei Zhao under the correspondence of Siyu Chen at the Department of Medical Oncology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, was built on a strikingly broad computational foundation. The team integrated seven single-cell RNA-sequencing cohorts, two spatial transcriptomic cohorts, bulk RNA sequencing linked to patient survival data, CRISPR-based gene essentiality screens, and three independent immunotherapy cohorts. Rather than relying on any single analytical method, the investigators assembled a machine learning framework in which different algorithms handled different parts of the problem, each feeding its output into the next stage of analysis.</p>
<p>The first step involved unsupervised consensus non-negative matrix factorization, a mathematical technique that decomposes gene expression data into coherent transcriptional programs without any prior labeling. Applied to malignant cells across the cohorts, this approach resolved four distinct malignant meta-programs. One of these, designated MP3, carried a mixed mesenchymal and interferon signaling signature, suggesting tumor cells that had partially undergone epithelial–mesenchymal transition while simultaneously mounting inflammatory responses. Crucially, the researchers found that MP3 carried prognostic information only in the context of the other three programs. When considered in isolation, its signal was misleading; when modeled jointly, patients with higher MP3 activity relative to the other programs fared significantly worse, with a hazard ratio of 1.43 per standard deviation and a p-value of 0.0045.</p>
<p>That context-dependence led the team to construct a composite score, essentially the difference between standardized MP3 activity and the activity of a fourth program, MP4, which resembled healthy alveolar cells and was independently protective. This single composite metric, z(MP3) minus z(MP4), proved prognostic on its own, with a hazard ratio of 1.40 and a p-value of 3.4 multiplied by ten to the negative sixth power. The reciprocal balance between an aggressive, plastic mesenchymal state and a differentiated, alveolar-like state thus encoded clinically meaningful information that neither program revealed alone. It is a technical but important lesson: in tumors defined by cellular plasticity, the relative composition of transcriptional states, not the abundance of any one state, appears to determine patient outcomes.</p>
<p>Having established the malignant programs, the researchers turned to the immune microenvironment and deployed deep generative models to interrogate neutrophils. Using scVI and its supervised extension scANVI, probabilistic models designed to denoise single-cell data and transfer cell type labels across datasets, the team resolved distinct neutrophil states within the tumor microenvironment. What emerged was an OSM-primed neutrophil axis. OSM, or oncostatin M, is an inflammatory cytokine, and neutrophils primed with it appeared to participate in a signaling circuit alongside SPP1-positive macrophages, the very cell population that had dominated prior studies of mesenchymal transition in this cancer. The two cell types formed what the authors describe as a partitioned dual circuit, with neutrophils and macrophages occupying complementary roles in sustaining the mesenchymal niche.</p>
<p>What made this finding particularly compelling was its spatial validation. Single-cell data strips away geography, telling researchers which cells exist but not where they sit within the tumor. To recover that geometry, the team applied cell2location, a probabilistic deep learning method for spatial deconvolution that estimates which cell types and states occupy each spot in a spatial transcriptomics slide. They coupled this with random forest multi-view modeling to map communication fluxes between cell populations. The results showed that OSM signaling flux was directed primarily toward macrophages and fibroblasts rather than toward the malignant cells themselves, which means that any influence of the neutrophil circuit on tumor cells is likely indirect, mediated through the stromal and macrophage compartments. The two-compartment niche, pairing OSM-primed neutrophils with their macrophage and fibroblast partners, was reproducible across both spatial cohorts, strengthening confidence that it reflects genuine tumor architecture rather than computational artifact.</p>
<p>The final and perhaps most ambitious stage of the pipeline used Geneformer, a transformer-based single-cell foundation model pretrained on large corpora of gene expression data, to perform in silico gene deletion perturbations. In effect, the model simulates what happens to a cell&#8217;s transcriptional state when a particular gene is removed, allowing researchers to computationally screen candidate dependencies across the three coupled state transitions identified in the study: from alveolar-like to mesenchymal malignant states, and through the associated neutrophil and macrophage circuits. The screen converged on SEC61G, a gene encoding a component of the SEC61 translocon, the protein channel in the endoplasmic reticulum membrane through which secreted and membrane proteins pass as they are synthesized. Because mesenchymal tumor cells and inflammatory immune cells both rely heavily on protein secretion, a translocon dependency is biologically plausible.</p>
<p>The authors are notably careful about how they frame this nomination. SEC61G already had independent published support in lung adenocarcinoma, so the team treats it as a positive control re-derived de novo rather than a wholly new drug target. What they report as genuinely new is that SEC61G&#8217;s prognostic signal is independent of 7p11.2 copy number, the chromosomal region in which the gene resides and a region frequently amplified in this cancer. In other words, the poor outcomes associated with high SEC61G expression are not simply a reflection of having more copies of the gene, hinting at regulatory or functional dependencies that copy number analysis alone would miss. The overall survival hazard ratio for SEC61G was 1.64 with a p-value of 1.3 multiplied by ten to the negative sixth, and the gene showed higher expression in immunotherapy non-responders in two of the three checkpoint inhibitor cohorts examined, reaching statistical significance in one.</p>
<p>What elevates this study above a typical bioinformatics exercise is its insistence on orthogonal validation. The four-endpoint validation cascade required convergent evidence from survival analysis, immunotherapy response data, CRISPR essentiality screens, and the perturbation modeling itself before any candidate dependency was accepted. This design directly addresses one of the most persistent criticisms of single-cell oncology research: that computational nominations of drug targets often evaporate under experimental scrutiny. By demanding agreement across data types that share no common analytical machinery, the framework filters out candidates whose signals are artifacts of any single method or dataset. The result is a shorter but far more defensible list of candidate targets than a typical computational screen would produce.</p>
<p>The broader significance lies in the generalizability of the approach. The authors explicitly position their strategy, foundation model perturbation followed by multi-endpoint orthogonal validation, as a reusable template for nominating therapeutic targets in plasticity-driven solid tumors, a category that includes many of the hardest cancers to treat. As foundation models like Geneformer mature and spatial transcriptomic datasets accumulate, pipelines of this kind could compress the path from observational single-cell atlases to testable therapeutic hypotheses. For lung adenocarcinoma patients, the immediate deliverables are a newly mapped neutrophil-associated mesenchymal niche that reframes how the tumor microenvironment sustains aggressive cell states, and a candidate translocon dependency whose vulnerability can now be pursued with experimental tools. The work was funded by the National Natural Science Foundation of China and the Shanghai Committee of Science and Technology, and relied exclusively on publicly available, de-identified human data, meaning that its findings can be independently reanalyzed and challenged by any laboratory with computational resources and internet access.</p>
<p><strong>Subject of Research:</strong> Deep learning integration of single-cell and spatial transcriptomics to map a neutrophil-associated mesenchymal niche and identify candidate tumor dependencies in lung adenocarcinoma.</p>
<p><strong>Article Title:</strong> Deep learning integration of single-cell and spatial transcriptomics reveals a neutrophil-associated mesenchymal niche and a candidate translocon dependency in lung adenocarcinoma</p>
<p><strong>Article References:</strong> Deep learning integration of single-cell and spatial transcriptomics reveals a neutrophil-associated mesenchymal niche and a candidate translocon dependency in lung adenocarcinoma. (n.d.). <a href="https://doi.org/10.1007/s00262-026-04560-3" rel="noopener noreferrer">https://doi.org/10.1007/s00262-026-04560-3</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1007/s00262-026-04560-3" rel="noopener noreferrer">10.1007/s00262-026-04560-3</a></p>
<p><strong>Keywords:</strong> lung adenocarcinoma, single-cell RNA sequencing, spatial transcriptomics, tumor-associated neutrophils, epithelial–mesenchymal transition, SEC61G, deep learning, tumor microenvironment, Geneformer, immunotherapy response, OSM signaling, cancer prognosis</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">194339</post-id>	</item>
		<item>
		<title>KRAS mutation subtypes reshape tumor microenvironment and survival in colorectal cancer</title>
		<link>https://scienmag.com/kras-mutation-subtypes-reshape-tumor-microenvironment-and-survival-in-colorectal-cancer/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Fri, 11 Sep 2026 04:22:49 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[cancer prognosis]]></category>
		<category><![CDATA[genetic heterogeneity in colorectal cancer]]></category>
		<category><![CDATA[growth-factor signaling pathways in cancer]]></category>
		<category><![CDATA[heterogeneity of KRAS mutations]]></category>
		<category><![CDATA[immune suppression in tumors]]></category>
		<category><![CDATA[immune suppression signatures in tumor microenvironment]]></category>
		<category><![CDATA[impact of amino acid changes in KRAS]]></category>
		<category><![CDATA[impact of amino acid substitutions in KRAS]]></category>
		<category><![CDATA[implications for targeted therapy in KRAS-mutant tumors]]></category>
		<category><![CDATA[influence of KRAS mutations on tumor progression]]></category>
		<category><![CDATA[KRAS gene mutation analysis]]></category>
		<category><![CDATA[KRAS mutation subtypes in colorectal cancer]]></category>
		<category><![CDATA[KRAS-driven signaling pathways in cancer]]></category>
		<category><![CDATA[molecular subtypes of colorectal cancer]]></category>
		<category><![CDATA[molecular subtypes of KRAS-mutant colorectal tumors]]></category>
		<category><![CDATA[organ-specific metastasis]]></category>
		<category><![CDATA[organ-specific metastasis in colorectal cancer]]></category>
		<category><![CDATA[personalized cancer therapy based on mutation subtype]]></category>
		<category><![CDATA[prognostic significance of KRAS mutations]]></category>
		<category><![CDATA[role of GTPase activity in oncogenes]]></category>
		<category><![CDATA[role of KRAS mutations in cancer]]></category>
		<category><![CDATA[tumor microenvironment]]></category>
		<category><![CDATA[tumor microenvironment differences]]></category>
		<guid isPermaLink="false">https://scienmag.com/kras-mutation-subtypes-reshape-tumor-microenvironment-and-survival-in-colorectal-cancer/</guid>

					<description><![CDATA[Colorectal cancer has long been divided into two camps at the genetic level: tumors carrying mutations in the KRAS gene and tumors that do not. A large new study argues that this binary view is far too crude. In an analysis of 1,268 patients with colorectal cancer, researchers report that individual KRAS mutation subtypes behave [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Colorectal cancer has long been divided into two camps at the genetic level: tumors carrying mutations in the KRAS gene and tumors that do not. A large new study argues that this binary view is far too crude. In an analysis of 1,268 patients with colorectal cancer, researchers report that individual KRAS mutation subtypes behave like distinct molecular diseases, each carrying its own prognostic weight, its own tendency to spread to particular organs, and its own signature of immune suppression within the tumor microenvironment. The findings, published in the Journal of Translational Medicine, suggest that the specific amino acid changed by a KRAS mutation may matter as much as the fact that the gene is mutated at all.</p>
<p>KRAS is one of the most frequently mutated oncogenes in human cancer, and in this cohort it was altered in 45.7 percent of the colorectal tumors sequenced. The gene encodes a small GTP-binding protein that sits at the top of growth-factor signaling pathways, cycling between an active, GTP-bound state and an inactive, GDP-bound state. Mutations at codon 12 and related hotspots impair the protein&#8217;s GTPase activity, locking KRAS into its active conformation and driving constitutive signaling through the MAPK and PI3K pathways. But not all codon-12 substitutions are biochemically identical. G12C, G12V, and G12A alter different amino acids and produce different kinetics of nucleotide binding and downstream signaling, and the new study shows that these biochemical differences translate into clinically meaningful divergence.</p>
<p>The retrospective study, led by a team at Zhongshan Hospital, Fudan University, integrated targeted next-generation sequencing with detailed clinical outcome data. When the researchers stratified patients by specific KRAS allele, a striking prognostic hierarchy emerged. Among patients with stage I-III disease, those whose tumors carried G12C or G12V mutations had dramatically poorer disease-free survival than patients with KRAS wildtype tumors, with hazard ratios of 9.3 and 4.6, respectively, and p values below 0.001. In the metastatic setting, a different allele took the lead: G12A was associated with the worst progression-free survival among stage IV patients, carrying a hazard ratio of 9.6. In other words, the most dangerous KRAS subtype depends on the stage of disease being considered, a nuance that conventional binary KRAS testing entirely obscures.</p>
<p>The study also uncovered a connection between KRAS alleles and the organs to which tumors preferentially spread, a phenomenon known as metastatic organotropism. Tumors harboring G12V and G12C mutations showed pronounced tropism for the liver, while G12A-mutant tumors were enriched in bone metastases. This allelic mapping of metastatic behavior has practical implications. Clinicians already know that the site and burden of metastatic disease shape treatment decisions and prognosis; if the KRAS allele helps predict where a tumor will seed, subtype-level genotyping could add a layer of anticipatory surveillance that is currently absent from standard practice.</p>
<p>To understand the biology underlying these clinical patterns, the investigators turned to the tumor microenvironment, analyzing bulk and single-cell RNA sequencing data. Bulk transcriptomic analysis revealed that tumors carrying the aggressive G12A, G12C, and G12V variants were characterized by significantly lower immune cell infiltration and by suppression of interferon response pathways. Interferon signaling is a central arm of innate anti-tumor immunity, and its dampening suggests that these KRAS variants do not merely grow faster; they actively sculpt a microenvironment in which immune cells are fewer, less alert, and less capable of recognizing malignant tissue. An immune-excluded phenotype of this kind is also a known predictor of poor response to immunotherapy, providing a mechanistic bridge between the observed survival deficits and the immunological landscape of the tumors.</p>
<p>Single-cell RNA sequencing sharpened the picture further. The immunosuppressive phenotype appeared to be linked to stromal remodeling, specifically involving cancer-associated fibroblasts, the stromal cells that infiltrate tumors and profoundly influence their behavior. In the aggressive KRAS subtypes, the researchers found enrichment of pro-tumorigenic CXCL14-expressing cancer-associated fibroblasts and depletion of protective IGF1-expressing fibroblasts, with CD74-positive fibroblasts similarly reduced. CXCL14-positive CAFs are thought to promote tumor progression through chemokine-mediated recruitment and immunomodulatory effects, whereas IGF1-positive populations have been associated with protective, less permissive stromal contexts. Analysis of intercellular communication networks reinforced the finding, showing that KRAS mutation status reshapes the signaling conversations between tumor cells, fibroblasts, and immune cells.</p>
<p>The clinical consequences of this work could be substantial. Today, KRAS testing in colorectal cancer is largely binary, performed chiefly to determine eligibility for anti-EGFR antibodies such as cetuximab and panitumumab, which are ineffective in KRAS-mutant tumors. The new data argue that reporting should extend to the specific allele. A patient with a stage II tumor carrying G12C may warrant more intensive surveillance than the stage alone would suggest, while a metastatic patient with G12A may face a particularly poor trajectory that could justify earlier escalation of systemic therapy. The authors propose that their allele-specific landscape provides a rationale for refining prognostic models and for tailoring therapeutic strategies to the vulnerabilities of each KRAS subtype.</p>
<p>Therapeutically, the timing is propitious. For decades KRAS was considered undruggable, but the 2021 approval of KRAS G12C inhibitors transformed the field, and allele-specific agents for other variants are in development. The demonstration that G12C tumors carry a distinctly immunosuppressive, interferon-suppressed microenvironment raises testable questions about combination strategies, particularly pairing allele-specific inhibitors with immunotherapy or with agents that remodel stromal signaling. Similarly, the identification of CXCL14-positive fibroblasts as a feature of aggressive subtypes points to stromal targets that could be exploited regardless of direct KRAS druggability.</p>
<p>The study has the usual limitations of retrospective work. It drew on a single institutional cohort, and the authors note that findings will require validation in independent datasets and prospective studies before prognostic models can be revised. The survival analyses were adjusted for available clinicopathological variables, but unrecognized confounders can never be fully excluded in this design. The single-cell component, while providing mechanistic depth, involved a smaller subset of patients. Nevertheless, the consistency between the clinical, bulk transcriptomic, and single-cell layers of evidence lends weight to the central conclusion that KRAS subtypes are biologically non-equivalent.</p>
<p>What makes the study resonate beyond colorectal cancer is its conceptual message. Oncology has been moving toward allele-level precision for years in lung cancer, where EGFR and ALK genotypes dictate therapy, but KRAS in colorectal cancer has remained a blunt category. By showing that hazard ratios of the same order as major staging variables attach to specific KRAS alleles, the researchers effectively argue that a G12V tumor and a G12A tumor are different diseases that happen to share a gene. If validated, subtype-level KRAS annotation could become a routine element of colorectal cancer pathology reports, joining microsatellite instability and RAS/BRAF status as a standard axis of risk stratification.</p>
<p>For patients, the immediate message is not a new drug but a sharper question to ask: not simply whether a tumor is KRAS-mutant, but which KRAS mutation it carries. For oncologists, the study offers a data-driven basis for reinterpreting a mutation they already measure, and for researchers, it maps a set of concrete vulnerabilities, from interferon suppression to CXCL14-positive stromal niches, that define the biology of the most aggressive KRAS alleles. As the authors conclude, deconstructing the monolithic view of KRAS-mutant colorectal cancer may be the first step toward therapies designed not around a gene, but around the specific molecular entity each mutation creates.</p>
<div class="scienmag-article-metadata"><strong>Subject of Research:</strong> Distinct KRAS mutation subtypes and their effects on prognosis, metastatic patterns, and the tumor microenvironment in colorectal cancer</p>
<p><strong>Article Title:</strong> Distinct KRAS mutation subtypes reprogram the tumor microenvironment and shape survival outcomes in colorectal cancer</p>
<p><strong>Article References:</strong> Liu, Y., Zhu, Y., Yu, S., Xu, X., Yu, Y., Zhu, M., Xu, Z., Zhang, C., Zhou, H., Li, H., Ai, L., Liu, Q., Peng, K., Wang, J., &amp; Liu, T. (2026). Distinct KRAS mutation subtypes reprogram the tumor microenvironment and shape survival outcomes in colorectal cancer. <em>Journal of Translational Medicine</em>. <a href="https://doi.org/10.1186/s12967-026-08879-4" target="_blank" rel="noopener noreferrer">https://doi.org/10.1186/s12967-026-08879-4</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12967-026-08879-4" target="_blank" rel="noopener noreferrer">10.1186/s12967-026-08879-4</a></p>
<p><strong>Keywords:</strong> KRAS subtypes, colorectal cancer, prognostic hierarchy, tumor microenvironment, disease-free survival, progression-free survival, metastatic organotropism, cancer-associated fibroblasts, interferon response, single-cell RNA sequencing, G12C, G12A</p>
</div>
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		<post-id xmlns="com-wordpress:feed-additions:1">192356</post-id>	</item>
		<item>
		<title>Immune and Nutrition Impact Age-Related Survival in Nasopharyngeal Carcinoma</title>
		<link>https://scienmag.com/immune-and-nutrition-impact-age-related-survival-in-nasopharyngeal-carcinoma/</link>
		
		<dc:creator><![CDATA[Nathaniel Bowman]]></dc:creator>
		<pubDate>Thu, 09 Jul 2026 15:28:21 +0000</pubDate>
				<category><![CDATA[Medicine]]></category>
		<category><![CDATA[age-related disparities in cancer outcomes]]></category>
		<category><![CDATA[biological mechanisms linking aging and cancer outcomes]]></category>
		<category><![CDATA[body mass index and cancer prognosis]]></category>
		<category><![CDATA[cancer prognosis]]></category>
		<category><![CDATA[cytokine profiles and tumor progression]]></category>
		<category><![CDATA[immune system aging and cancer survival]]></category>
		<category><![CDATA[immune-inflammatory biomarkers in nasopharyngeal carcinoma]]></category>
		<category><![CDATA[nutritional status and cancer survival]]></category>
		<category><![CDATA[retrospective cohort studies in cancer research]]></category>
		<category><![CDATA[serum albumin as a prognostic indicator in NPC]]></category>
		<category><![CDATA[systemic physiological markers in elderly NPC patients]]></category>
		<category><![CDATA[tailored therapeutic interventions for elderly NPC patients]]></category>
		<guid isPermaLink="false">https://scienmag.com/immune-and-nutrition-impact-age-related-survival-in-nasopharyngeal-carcinoma/</guid>

					<description><![CDATA[A groundbreaking study published in BMC Geriatrics has unveiled a complex interplay between immune-inflammatory responses, nutritional status, and age that shapes survival outcomes in older patients diagnosed with nasopharyngeal carcinoma (NPC). This research sheds new light on the biological mechanisms that might explain why aging impacts cancer prognosis, offering promising avenues for tailored therapeutic interventions. [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>A groundbreaking study published in BMC Geriatrics has unveiled a complex interplay between immune-inflammatory responses, nutritional status, and age that shapes survival outcomes in older patients diagnosed with nasopharyngeal carcinoma (NPC). This research sheds new light on the biological mechanisms that might explain why aging impacts cancer prognosis, offering promising avenues for tailored therapeutic interventions.</p>
<p>Nasopharyngeal carcinoma, a cancer originating in the epithelial cells of the nasopharynx, is known to disproportionately affect older adults, but the reasons behind age-related discrepancies in survival rates have remained elusive. By conducting a retrospective cohort study, researchers meticulously analyzed clinical data from elderly NPC patients, focusing on immune and nutritional biomarkers to decipher their roles in mediating the relationship between age and clinical outcomes.</p>
<p>In this study, the team utilized comprehensive immuno-inflammatory markers, such as cytokine profiles and white blood cell counts, alongside nutritional indicators including serum albumin and body mass index measures. These biomarkers were imperative in quantifying the systemic physiological state of patients, which could directly influence tumor progression and treatment response. The findings revealed that immune-inflammatory and nutritional status significantly mediate the effect of aging on survival, highlighting these factors as potential prognostic indicators.</p>
<p>The underlying science suggests that as patients age, their immune systems undergo senescence, characterized by chronic low-grade inflammation and diminished adaptive immunity. This phenomenon, often termed “inflammaging,” creates a microenvironment conducive to cancer advancement and resistance to treatment. Furthermore, malnutrition common in older patients exacerbates this vulnerability by impairing immune competence and tissue repair mechanisms.</p>
<p>Crucially, the study’s analytical models demonstrated that adjusting for inflammatory and nutritional parameters reduced the direct impact of chronological age on survival. This implies that the biological age, as reflected by immune-inflammatory and nutritional status, might serve as a more accurate predictor of outcomes than age alone. These insights are pivotal in personalized medicine, emphasizing the need for geriatric assessments that extend beyond conventional oncologic staging.</p>
<p>The research also raises important questions about integrating nutritional support and anti-inflammatory therapies into NPC treatment protocols for the elderly. Addressing malnutrition and systemic inflammation could enhance treatment tolerance and improve overall prognosis. Future clinical trials are encouraged to explore these adjunct strategies, potentially revolutionizing care paradigms for older cancer patients.</p>
<p>As life expectancy increases globally, understanding how aging biology intersects with cancer progression is critical. This study represents a significant step toward unraveling these intricate biological pathways and highlights the importance of a multidisciplinary approach in managing older adults with nasopharyngeal carcinoma.</p>
<p>In conclusion, by identifying immune-inflammatory and nutritional status as key mediators in the age-survival relationship among NPC patients, this research not only deepens our comprehension of cancer biology but also paves the way for innovative interventions aimed at improving the longevity and quality of life in this vulnerable population.</p>
<hr />
<p><strong>Subject of Research</strong>: Immune-inflammatory and nutritional factors mediating survival in older patients with nasopharyngeal carcinoma</p>
<p><strong>Article Title</strong>: Immune-inflammatory and nutritional status mediate the association between age and survival in older patients with nasopharyngeal carcinoma: a retrospective cohort study</p>
<p><strong>Article References</strong>: Huang, Z., Zheng, J., Li, Y. et al. Immune-inflammatory and nutritional status mediate the association between age and survival in older patients with nasopharyngeal carcinoma: a retrospective cohort study. BMC Geriatr (2026). https://doi.org/10.1186/s12877-026-07903-y</p>
<p><strong>Image Credits</strong>: AI Generated</p>
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