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	<title>breeding lines &#8211; Science</title>
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	<title>breeding lines &#8211; Science</title>
	<link>https://scienmag.com</link>
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		<title>Drone Models Rank Unseen Wheat Lines in Kazakhstan&#8217;s Harshest Season</title>
		<link>https://scienmag.com/drone-models-rank-unseen-wheat-lines-in-kazakhstans-harshest-season/</link>
		
		<dc:creator><![CDATA[Alan Morgan]]></dc:creator>
		<pubDate>Fri, 02 Oct 2026 10:27:15 +0000</pubDate>
				<category><![CDATA[Agriculture]]></category>
		<category><![CDATA[advanced agricultural technology in dry regions]]></category>
		<category><![CDATA[breeding lines]]></category>
		<category><![CDATA[climate impact on wheat yield]]></category>
		<category><![CDATA[cross-validation]]></category>
		<category><![CDATA[Drone-based crop yield prediction]]></category>
		<category><![CDATA[drought]]></category>
		<category><![CDATA[ERA5-Land]]></category>
		<category><![CDATA[genotype-by-environment]]></category>
		<category><![CDATA[impact of drought on wheat production]]></category>
		<category><![CDATA[Kazakhstan]]></category>
		<category><![CDATA[laser scanning for crop analysis]]></category>
		<category><![CDATA[LiDAR terrain]]></category>
		<category><![CDATA[LightGBM]]></category>
		<category><![CDATA[Machine learning]]></category>
		<category><![CDATA[machine learning in agriculture]]></category>
		<category><![CDATA[precision agriculture in Kazakhstan]]></category>
		<category><![CDATA[ranking unseen wheat lines]]></category>
		<category><![CDATA[reanalysis climate data in agriculture]]></category>
		<category><![CDATA[remote sensing in crop monitoring]]></category>
		<category><![CDATA[spring wheat]]></category>
		<category><![CDATA[UAV imagery for wheat breeding]]></category>
		<category><![CDATA[UAV multispectral imaging]]></category>
		<category><![CDATA[yield prediction]]></category>
		<category><![CDATA[yield prediction model validation]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=227167</guid>

					<description><![CDATA[A two-year UAV, LiDAR and climate modelling study in northern Kazakhstan shows that drone-based models can moderately rank spring wheat breeding lines never seen in training, but that random validation inflates accuracy and a model built on one season failed entirely when applied to a drought-hit next season.]]></description>
										<content:encoded><![CDATA[<p>In the rainfed wheat steppe of northern Kazakhstan, the difference between a good season and a bad one can be a collapse of nearly two thirds in grain yield. That is exactly what happened between 2024 and 2025 at an advanced yield trial nursery in the Akmola region, where mean plot yield fell from 21.17 to 7.54 centners per hectare, a 64 percent drop that almost fully separated the two yield distributions. A new study in Smart Agricultural Technology used this dramatic natural experiment to ask a question that most drone-based yield prediction papers avoid: can a machine learning model, built from UAV imagery, laser-scanned terrain and reanalysis climate data, correctly rank spring wheat breeding lines that it has never seen during training?</p>
<p>The answer matters because breeding programmes work on a rolling basis. Each selection cycle introduces new candidate lines and retires others, so the genotypes requiring evaluation in any given year are typically absent from the historical data available for model development. Yet many published UAV yield studies report impressive accuracy using random K-fold cross-validation, a procedure that can place replicate plots of the same line and season on both sides of the train-test split. The new research, led by Dastan Yelubayev and colleagues at the A.I. Barayev Research and Production Centre for Grain Farming, quantified just how optimistic that practice is. On identical data, random ten-fold cross-validation produced a coefficient of determination of 0.890, while holding out complete breeding lines dropped the same model to 0.587, an optimism gap of roughly 0.30 R-squared units attributable purely to the validation design.</p>
<p>The experiment itself was a substantial piece of field logistics. Across two seasons the team flew a DJI Phantom 4 Multispectral drone on seven and nine missions respectively, capturing five-band reflectance imagery at 2.1 to 2.9 centimetre resolution from altitudes of 30 to 45 metres. A separate LiDAR survey each year, flown on a Matrice 300 RTK with a Zenmuse L1 sensor, reconstructed the underlying terrain surface through cloth-simulation filtering, yielding static covariates such as plot slope and the fraction of each plot sitting in topographic depressions. Hourly ERA5-Land reanalysis variables, including precipitation, vapour-pressure deficit, soil moisture and solar radiation, were aggregated over line-specific phenological windows spanning emergence to heading and heading to maturity. In total, 82 candidate predictors per plot entered the analysis pipeline.</p>
<p>Feature selection proved humbling. Screening and recursive elimination with a gradient-boosted LightGBM learner reduced the pool to 11 predictors, dominated by eight vegetation index features, mostly computed over the grain-filling window, one ERA5-Land soil moisture descriptor and two LiDAR terrain features. But when the entire selection procedure was repeated on 200 bootstrap resamples of the 22 training breeding lines, the number of retained predictors ranged from 5 to 50, and the exact 11-predictor set reappeared in only 8 percent of repetitions. The authors are explicit that the selected set should be regarded as one outcome of an unstable process, not a uniquely identified representation, a caveat that applies to much of the small-data machine learning literature in agricultural remote sensing.</p>
<p>The headline result concerns ranking rather than absolute prediction. For the 31 breeding lines entirely absent from training, the correlation between predicted and observed line-mean yields was 0.612 in 2024 and 0.650 in 2025, both statistically significant under Monte Carlo permutation tests. Because only 14 and 17 independent genotypes were available in the two seasons, the genotype-level confidence intervals were wide, spanning roughly 0.65 units, but the positive association held in both years despite the enormous seasonal contrast. For breeders, this within-season ordering is the quantity that matters: a model that ranks candidates correctly can help prioritise lines for further testing, even if its absolute yield estimates carry substantial error.</p>
<p>The most sobering finding came from the strictly prospective experiment. The team built an entire pipeline, from screening through model configuration, using 2024 data alone, froze it, and applied it to 2025. It failed completely. Predictions were biased upward by about 11.4 centners per hectare, with a predicted mean near 19 centners for a season whose observed mean was 7.5, and rank correlations were indistinguishable from zero across all target subsets. Crucially, the failure persisted even among genotypes that had been observed in 2024, so genotype novelty was not the cause. The likely culprit is extrapolation: the grain-filling soil moisture descriptor ranged from 0.4299 to 0.4333 cubic metres per cubic metre across the 2024 training plots, while every 2025 value fell between 0.3435 and 0.3605, a gap roughly twenty times the width of the training range. Tree-based models cannot extrapolate beyond their terminal regions, and the 2025 season lay entirely outside the learned domain.</p>
<p>Attribution analysis reinforced the seasonal-regime interpretation. The ERA5-Land layer-2 soil moisture descriptor carried the largest mean absolute SHAP contribution at 4.84 centners per hectare, about 2.3 times the next feature, and 99.6 percent of its training variance lay between seasons. Its signed attribution swung from positive in 2024 to negative in 2025, a 9.5 centner swing, indicating the model used it as a coarse indicator separating the two years rather than as a plot-scale soil water measurement. Because the entire nursery falls within a single reanalysis grid cell, differentiation among lines arises only through their phenological windows, which slice the shared climate series differently for each genotype. When the team neutralised this line-specific alignment by rebuilding all aggregations on fixed calendar windows, the 2024 rank correlation collapsed from 0.557 to 0.172 while 2025 held at 0.628, showing how fragile one season&#8217;s signal was.</p>
<p>Architecture comparisons delivered a further anti-climax for the deep learning enthusiasts. Six model families, including ridge and LASSO regression, random forest, a regime-conditional ensemble and a Transformer with a year-domain-adversarial head, produced pooled test R-squared values between 0.449 and 0.596, with overlapping uncertainty intervals. The architecture with the highest pooled accuracy, the Transformer, had the weakest 2024 rank correlation, while random forest led that season&#8217;s ranking. All ten paired contrasts of rank correlation against LightGBM included zero. Modality ablation told a similar story: removing the UAV spectral block caused the largest degradation, exceeding the refitting sensitivity scale, but the full four-modality combination was separated by 0.002 R-squared units or less from simpler configurations pairing UAV data with one complementary block. No evidence emerged that the complete multimodal stack outperformed simpler alternatives.</p>
<p>The authors are careful about what their framework is and is not. Because several predictors derive from grain-filling observations, the ranking becomes available only late in the season, so this is not an early-season forecast tool. It is best interpreted as a secondary candidate-ranking analysis for next-stage review, complementing rather than replacing routine harvest measurements and multi-environment yield trials. With only two seasons from a single nursery complex, generalisation across locations, soil types and future climates remains untested, and the 12.2 percent of variance attributable to genotype plus genotype-by-environment interaction sits at the low end of published values, pending confirmation over more environments.</p>
<p>Still, the study&#8217;s methodological message may prove its most durable contribution. The 0.30 R-squared optimism gap between random and genotype-held-out validation, and the complete failure of a prospective transfer across a strong seasonal shift, are quantified warnings for a field where headline accuracies above 0.85 are routinely reported under favourable validation designs. The authors recommend that UAV cereal yield studies report a complete-line holdout alongside conventional random cross-validation, and, where multiple seasons exist, a prospective evaluation in which no information from the target season enters model development. In an era when climate variability is tightening its grip on the Eurasian breadbasket, knowing what a yield model cannot do may be as valuable as knowing what it can.</p>
<p><strong>Subject of Research:</strong> UAV-based prediction of yield ranking for spring wheat breeding lines absent from model training across two contrasting seasons in northern Kazakhstan</p>
<p><strong>Article Title:</strong> Yield ranking of spring wheat breeding lines absent from model training within two contrasting seasons in northern Kazakhstan</p>
<p><strong>Article References:</strong> Yield ranking of spring wheat breeding lines absent from model training within two contrasting seasons in northern Kazakhstan. (n.d.). <a href="https://doi.org/10.1016/j.atech.2026.102588" rel="noopener noreferrer">https://doi.org/10.1016/j.atech.2026.102588</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1016/j.atech.2026.102588" rel="noopener noreferrer">10.1016/j.atech.2026.102588</a></p>
<p><strong>Keywords:</strong> spring wheat, UAV multispectral imaging, yield prediction, breeding lines, Kazakhstan, machine learning, LightGBM, ERA5-Land, LiDAR terrain, cross-validation, genotype-by-environment, drought</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">227167</post-id>	</item>
		<item>
		<title>From Genes to Agility Courses: What Really Shapes a Dog&#8217;s Reliance on Humans</title>
		<link>https://scienmag.com/from-genes-to-agility-courses-what-really-shapes-a-dogs-reliance-on-humans/</link>
		
		<dc:creator><![CDATA[William Thompson]]></dc:creator>
		<pubDate>Thu, 01 Oct 2026 08:56:08 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[animal cognition]]></category>
		<category><![CDATA[behavioral genetics]]></category>
		<category><![CDATA[breeding lines]]></category>
		<category><![CDATA[canine social behavior]]></category>
		<category><![CDATA[cooperative breeds]]></category>
		<category><![CDATA[dog behavior testing methods]]></category>
		<category><![CDATA[dog breed behavior]]></category>
		<category><![CDATA[dog dependence on humans]]></category>
		<category><![CDATA[dog problem-solving behavior]]></category>
		<category><![CDATA[dog response to separation]]></category>
		<category><![CDATA[dog sports]]></category>
		<category><![CDATA[dog training and reliance]]></category>
		<category><![CDATA[dog-human reliance]]></category>
		<category><![CDATA[dogs]]></category>
		<category><![CDATA[Domestication]]></category>
		<category><![CDATA[effects of life experiences on dogs]]></category>
		<category><![CDATA[ethology]]></category>
		<category><![CDATA[ethology of dogs]]></category>
		<category><![CDATA[functional selection]]></category>
		<category><![CDATA[human-dependency]]></category>
		<category><![CDATA[impact of evolutionary history on dogs]]></category>
		<category><![CDATA[influence of breeding practices on dogs]]></category>
		<category><![CDATA[separation test]]></category>
		<category><![CDATA[unsolvable task]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=221498</guid>

					<description><![CDATA[A study of 137 purebred dogs shows that human-dependency in dogs is shaped by functional breed selection, working versus show breeding lines, and lifetime experiences such as dog sports.]]></description>
										<content:encoded><![CDATA[<p>Why does a border collie stare imploringly at its owner when a treat box refuses to open, while a husky simply walks away? And why does one golden retriever fall apart when left alone in a living room while its littermate settles down for a nap? A new study from the Department of Ethology at Eötvös Loránd University in Budapest suggests that the answers lie not in any single explanation but in a layered interplay of evolutionary history, recent breeding practices, and the dog&#8217;s own life experiences. The research, published in BMC Biology by Csenge Anna Lugosi, Izabella Viktória Molnár and Péter Pongrácz, is the first to examine the combined effect of three distinct factors on how dependent dogs are on humans, and its findings challenge the simple idea that breed alone determines a dog&#8217;s social behavior.</p>
<p>The team tested 137 purebred dogs representing 49 breeds across two classic ethological paradigms: the so-called unsolvable task and an indoor separation test. In the unsolvable task, a dog is presented with a container holding food that it cannot open. After a brief period of solvable trials, the apparatus is secretly locked, and researchers record how the dog responds. Does it persist alone, or does it turn to the nearest human, alternating its gaze between the person and the apparatus in what ethologists call the two-stage gaze alternation? This looking-back response is widely interpreted as a solicitation of human help, a hallmark of the dog&#8217;s uniquely human-directed social attention. The separation test, meanwhile, measures how a dog copes when its owner steps out of sight, capturing behaviors such as whining, barking, and physical agitation that are associated with fear, frustration, and in extreme cases, separation-related disorder.</p>
<p>The first factor the researchers examined was functional selection, the historical division of breeds into those developed for cooperative work with humans, such as herding and sledding dogs, and those bred for independent work, such as livestock guarding and hunting breeds that must make decisions far from human direction. The logic of this division is straightforward: a sheepdog must constantly coordinate with its handler, while a guard dog left alone with a flock cannot afford to keep checking in with people. Decades of selective breeding for these contrasting working styles were expected to leave a measurable imprint on social cognition. The new data confirmed that expectation. Cooperative breeds displayed significantly more human-dependent behaviors in the unsolvable task than independent breeds did, turning more readily to people when the puzzle became impossible.</p>
<p>Yet the study&#8217;s most striking insight came from its second factor: the division within breeds. Modern pedigree breeding has split many breeds into working lines and show lines, sometimes for more than a century. Working-line dogs are still selected for performance in their original functional roles, while show-line dogs are selected primarily for conformation to breed standards and success in the ring. The researchers found that this within-breed division had a strong modifying effect on human-dependency. Working-line dogs showed weaker human-dependency than their show-line counterparts, a result that may seem counterintuitive at first glance, since working dogs are precisely the ones trained to collaborate with people. But the authors interpret this pattern through the lens of task independence: dogs bred for demanding practical work are expected to solve problems on their own and only then recruit human assistance, whereas show-line dogs, whose daily lives revolve around close handling, grooming, and constant human management, may have experienced intensified selection or simply accumulated experience favoring persistent human orientation.</p>
<p>The third factor moved the analysis from the breeding kennel to the dog&#8217;s own biography: regular engagement in dog sports. Whether a dog participated in activities such as agility, obedience, or other structured training turned out to be far more than a footnote. Sports engagement could actually mask the influence of the breeding lines, reshaping dependency in opposite directions depending on the dog&#8217;s genetic background. Among show-line dogs, participation in sports was associated with lower human-dependency, plausibly because these dogs learned to work through challenges with a handler&#8217;s guidance rather than defaulting to helpless solicitation. Among working-line dogs, however, sports involvement came with increased reliance on humans. The authors suggest that intensive shared training may amplify the cooperative tendencies already latent in these breeds, teaching dogs that human attention is a highly effective problem-solving resource.</p>
<p>The separation test added a second, emotionally charged dimension to the picture. Here, all three factors were associated with the dogs&#8217; reactions, but the specific behaviors told different stories. Whining, which the researchers interpret as a sign of fear, was more prevalent in show-line dogs, hinting that these animals may be more vulnerable to distress when their ever-present human caretakers disappear. Barking, by contrast, was classified as a sign of frustration, and it was high in two very different groups: sport-involved dogs from independent breeds and dogs from non-working cooperative breeds. This dissociation between fear-related and frustration-related vocalizations underscores a point that behaviorists have long emphasized but the public often overlooks: separation responses are not a single phenomenon. A dog that whines and paces may be experiencing something quite different from a dog that barks insistently at the door, and the underlying causes may trace back to entirely different combinations of breeding and experience.</p>
<p>Taken together, the results support a conclusion that is both elegant and consequential: human-dependency is a universal trait of domestic dogs, but it is primarily determined at two levels of selection, the ancient functional selection that created breeds, and the more recent selection that carved those breeds into working and show lines. On top of this genetic architecture, lifetime experiences such as training and sports activity act as powerful modulators, capable of amplifying or dampening the inherited predisposition. In statistical terms, the study treated these factors in combination rather than in isolation, and it is precisely this multilevel design that allows the authors to disentangle effects that single-factor studies would inevitably confound. A show-line border collie that never does agility is not behaviorally equivalent to a working-line border collie that competes every weekend, even though both carry the same breed name on their papers.</p>
<p>The methodological care behind these findings deserves attention. The testing protocols were reviewed and approved by the Institutional Animal Welfare Committee at Eötvös Loránd University, in accordance with Hungarian regulations on animal experimentation and the guidelines of the Association for the Study of Animal Behavior. Owners were informed of the study&#8217;s aims and procedures and could halt testing at any time if they felt their dog was experiencing unacceptable stress. The dogs were recruited voluntarily through social media advertisements, and the sample&#8217;s breadth, 137 dogs spanning 49 breeds, gives the analysis genuine reach across the canine pedigree landscape, even though the authors acknowledge that breed-level and line-level conclusions rest on the distribution of dogs within their sample.</p>
<p>The practical implications ripple outward well beyond academic ethology. For working-dog programs, the results suggest that selecting breeding stock on pedigree lines alone may not predict the social profile of the resulting puppies; the rearing and training environment can shift the behavioral outcome substantially. For the growing field of animal-assisted interventions, where a dog&#8217;s tolerance for close human contact and its resilience during separations are critical, the finding that show-line dogs whine more when left alone could inform how therapy and assistance dogs are sourced and prepared. And for the millions of ordinary owners struggling with dogs that panic at the door, the study offers a reframing: separation distress is not a moral failing or a simple matter of spoiling, but the product of deep evolutionary currents interacting with the specific life a dog has led.</p>
<p>There is also a broader scientific lesson here about how we study domestication. Dogs are often described as the oldest domestic animal and a model for understanding the evolution of social cognition, yet much of the classic research treats breed as a monolithic category. This study demonstrates that the breed label conceals at least two nested layers of selection, and that an individual dog&#8217;s history of structured activity can override or redirect what those layers predict. The human-dependent behavior that makes dogs so extraordinary among animals, their willingness to gaze into our eyes and solicit our help when the world becomes unsolvable, is not written in a single set of genes. It is written in the accumulated choices of breeders across centuries, in the split between the show ring and the working field, and in the hours a particular dog spends learning, alongside a human partner, that two minds are better than one.</p>
<p><strong>Subject of Research:</strong> Multilevel evolutionary and environmental influences on human-dependent behavior in domestic dogs</p>
<p><strong>Article Title:</strong> The human-dependent behavior of dogs is influenced by multilevel evolutionary and environmental factors</p>
<p><strong>Article References:</strong> Lugosi, C. A., Molnár, I. V., &amp; Pongrácz, P. (2026). The human-dependent behavior of dogs is influenced by multilevel evolutionary and environmental factors. <em>BMC Biology</em>. <a href="https://doi.org/10.1186/s12915-026-02728-y" rel="noopener noreferrer">https://doi.org/10.1186/s12915-026-02728-y</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1186/s12915-026-02728-y" rel="noopener noreferrer">10.1186/s12915-026-02728-y</a></p>
<p><strong>Keywords:</strong> dogs, animal cognition, ethology, functional selection, breeding lines, unsolvable task, separation test, dog sports, human-dependency, domestication, cooperative breeds, behavioral genetics</p>
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