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	<title>biomolecules &#8211; Science</title>
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	<title>biomolecules &#8211; Science</title>
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		<title>Rings of Power: How Key Biomolecules Could Tame Nutrient Cycles in Aquatic Food Webs</title>
		<link>https://scienmag.com/rings-of-power-how-key-biomolecules-could-tame-nutrient-cycles-in-aquatic-food-webs/</link>
		
		<dc:creator><![CDATA[Gavin Prescott]]></dc:creator>
		<pubDate>Fri, 09 Oct 2026 14:01:59 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[aquaculture]]></category>
		<category><![CDATA[aquatic food webs]]></category>
		<category><![CDATA[Aquatic nutrient cycles]]></category>
		<category><![CDATA[biomolecular packages in food webs]]></category>
		<category><![CDATA[biomolecules]]></category>
		<category><![CDATA[biomolecules regulating nutrient dynamics]]></category>
		<category><![CDATA[ecological stoichiometry]]></category>
		<category><![CDATA[ecological stoichiometry and Redfield ratio]]></category>
		<category><![CDATA[essential amino acids]]></category>
		<category><![CDATA[eutrophic lakes and algae blooms]]></category>
		<category><![CDATA[eutrophication]]></category>
		<category><![CDATA[fish nutrition]]></category>
		<category><![CDATA[food web nutrient transfer]]></category>
		<category><![CDATA[nitrogen]]></category>
		<category><![CDATA[nitrogen and phosphorus pollution]]></category>
		<category><![CDATA[nutrient cycles]]></category>
		<category><![CDATA[nutrient flow in aquatic ecosystems]]></category>
		<category><![CDATA[nutrient forms and ecosystem health]]></category>
		<category><![CDATA[nutrient management in freshwater systems]]></category>
		<category><![CDATA[phosphorus]]></category>
		<category><![CDATA[planetary boundaries and nutrient overload]]></category>
		<category><![CDATA[strategies for mitigating nutrient pollution]]></category>
		<category><![CDATA[water quality]]></category>
		<category><![CDATA[zooplankton]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=254249</guid>

					<description><![CDATA[A new conceptual paper argues that the biomolecular packaging of carbon, nitrogen, and phosphorus, not their elemental ratios, governs nutrient cycling in aquatic food webs and could turn eutrophic ponds into regenerative nutrient-capture systems.]]></description>
										<content:encoded><![CDATA[<p>Global nutrient cycles are running dangerously hot. Humanity has already pushed nitrogen and phosphorus flows beyond the safe operating space of Earth&#8217;s planetary boundaries, and the consequences are visible in every eutrophic lake and algae-choked pond. A new conceptual paper published in Web Ecology by Koushik Roy and Jan Mraz of the University of South Bohemia argues that the scientific community has been tackling this crisis with the wrong toolkit. The problem, they contend, is not simply how much carbon, nitrogen, and phosphorus circulate through ecosystems, but in which biomolecular packages those elements arrive at the animals that sit above the primary producers. Their provocative answer borrows a metaphor from fantasy fiction: certain nutrient forms act like rings of power, orchestrating the fate of entire nutrient cycles in aquatic food webs.</p>
<p>For decades, ecologists have understood food webs through the lens of elemental ratios. Ecological stoichiometry, built on the famous Redfield ratio, treats carbon, nitrogen, and phosphorus as the fundamental currencies of life, tracking how these elements flow from algae to zooplankton to fish. Roy and Mraz acknowledge that this framework works reasonably well up to the level of primary producers. Plants, fungi, and protists genuinely do grow on free forms of elements, and the more nitrogen or phosphorus is fertilized into their environment, the more they grow. But the moment you move above the producers, the logic breaks down, and this is where the authors believe ecology has gone astray.</p>
<p>Animals, unlike plants, do not grow on free elemental nitrogen or phosphorus. They require biomolecules: proteins, lipids, carbohydrates, phospholipids, and specific amino acids. The evidence for this disconnect is striking. In fish, a meta-analysis of diet manipulation studies and field surveys found that the mean effect of dietary nitrogen-to-phosphorus ratios on excretion ratios was not significantly different from zero. This led researchers to hypothesize that future work must consider not just the ratios of nutrients in the diet but the molecular forms in which they are delivered. Roy and Mraz take this hypothesis to its logical conclusion: total nitrogen in seston or algae may be essentially meaningless for a zooplankter or a fish. What matters is the nitrogen bound in essential amino acids such as lysine and methionine, the carbon carried in digestible non-protein fractions like starch, and the phosphorus packaged in phospholipids rather than in apatite or phytate forms.</p>
<p>The authors illustrate this with concrete examples from fish nutrition. Supply the same amount of nitrogen to fish mainly through non-essential amino acids, and growth is modest; supply it through essential amino acids, and growth improves markedly. Deliver carbon through a high-protein diet versus non-protein energy fractions on an isoenergetic basis, and the non-protein route yields better growth. Phosphorus storage in fish remains low whenever key biomolecular packages are in short supply, regardless of how much total phosphorus the diet contains. These interactions, well documented in animal nutrition literature, are systematically overlooked in food web ecology, where carbon, nitrogen, and phosphorus are mathematically treated as if every atom were equivalent.</p>
<p>Why does this matter so much for animals? The answer lies in evolutionary physiology. Consumers above the primary producers have lost roughly half of their amino acid synthesis capabilities, including the ability to make essential amino acids. Unlike plants, animals cannot use photonic energy to synthesize biomass from absorbed elements; they must first catabolize energy-rich molecules to fuel the synthesis and storage of new matter. Their bodies are governed by homeostatic control, meaning they cannot simply mirror the elemental composition of their food. The fates of carbon, nitrogen, and phosphorus inside an animal, whether retained in biomass or excreted back into the environment, are dictated by a handful of key biomolecules whose required proportions shift relative to the energy available from non-key molecules.</p>
<p>This is where the rings of power concept acquires its practical teeth. When surplus energy comes from dietary non-key biomolecules such as starch, glycogen, saturated fats, or non-essential amino acids, the animal&#8217;s requirement for expensive key biomolecules drops, and more dietary nitrogen and phosphorus remain locked in body tissue. When energy from non-key biomolecules is inadequate, the animal is forced to burn its own key biomolecules for fuel, destroying them and releasing their nitrogen and phosphorus back into the water. In the authors&#8217; framing, sufficient rings of power abolish the nutrient-energy transfer barriers between food and body and suppress nutrient leakage from consumers. When the rings are missing, ecosystems degrade into a soup of free nutrients: primary productivity overshoots, secondary and tertiary productivity stall, and the chain of trophic transfer efficiency breaks down entirely.</p>
<p>The concept has immediate relevance for one of the most stubborn water quality problems on the planet. Nutrients from human settlements, agricultural runoff, and farming accumulate in standing water bodies like the drain of a shower sink, driving harmful algal blooms and hypoxic dead zones. Roy and Mraz point out that specific rings of power, such as the amino acid lysine, saturated fatty acids, and the carbohydrate starch, go missing from pond plankton over the vegetative season or are absent throughout it. Their absence impedes the assimilation of nutrients into the bodies of aquatic consumers, leaving nitrogen and phosphorus freely available in the water column. Fish excretion alone can support a significant proportion of lake primary productivity, so the nutritional state of fish stocks directly modulates how much phosphorus recycles versus how much stays locked in biomass.</p>
<p>The proposed solution is audacious: design stoichiometrically corrective seasonal feeds spiked with the rings of power and deploy them in hypertrophic inland water bodies to convert pollution into harvestable biomass. In spring and autumn, digestible non-protein energy feeds would tip the balance; in summer, feeds balanced in essential amino acids and non-protein energy would sustain it. Well-fed fish with high metabolic satiety and gut fullness would graze less actively on zooplankton, allowing the planktonic food web to keep carbon, nitrogen, and phosphorus sequestered. Fish would additionally absorb orthophosphate directly from the water through their integuments, adding a second pathway for nutrient removal. Periodic stocking and harvesting of fish stocks would then physically crop the anthropogenic nutrients out of the ecosystem, transforming eutrophic ponds from points of pollution into regenerative solutions.</p>
<p>This approach deliberately exploits what the authors call a natural flaw. Natural food webs help digest nutrients, but metabolic assimilation is poorly constrained by stoichiometric errors and consumer homeostasis when diets are imbalanced. In nature, this is a deliberate error that keeps primary productivity running on the free nutrients leaked by consumers. Animal nutritionists have spent decades correcting precisely these flaws in commercial production systems, achieving far higher nutrient use efficiencies in poultry, pigs, and fish than were possible in the past. Roy and Mraz argue that this expertise, honed by commercial interest and physiological understanding, is exactly what ecology has been missing, and they call for the establishment of nutritional ecology as a formal field within educational and research organizations, with animal nutritionists trained and tasked to work on ecological applications.</p>
<p>The rings of power concept is, at this stage, a conceptual framework rather than a proven remedy, and the authors are candid about its speculative nature. Yet it arrives at a moment when conventional remediation, chemical treatments, and algae- or microbe-based biotechnologies struggle against the sheer scale of global eutrophication. If even a fraction of the framework holds under field testing, the implications ripple outward: pond aquaculture could become a nutrient-capture industry, fishponds across temperate Europe could double as water purification infrastructure, and the stubborn boundary between the science of what animals eat and the science of how ecosystems work might finally be bridged. Sometimes, the authors suggest, the most powerful tool for saving an ecosystem is not a new chemical or a new organism, but a better understanding of the molecular packages in which nature&#8217;s elements already travel.</p>
<p><strong>Subject of Research:</strong> Biomolecular control of nutrient cycling in aquatic food webs and regenerative aquaculture</p>
<p><strong>Article Title:</strong> The Rings of Power: managing nutrient cycles in aquatic food webs above and beyond primary producers</p>
<p><strong>Article References:</strong> Roy, K., &amp; Mraz, J. (2026). The Rings of Power: managing nutrient cycles in aquatic food webs above and beyond primary producers. <em>Web Ecology, 26</em>(1), 27-33. <a href="https://doi.org/10.5194/we-26-27-2026" rel="noopener noreferrer">https://doi.org/10.5194/we-26-27-2026</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.5194/we-26-27-2026" rel="noopener noreferrer">10.5194/we-26-27-2026</a></p>
<p><strong>Keywords:</strong> nutrient cycles, aquatic food webs, ecological stoichiometry, eutrophication, fish nutrition, essential amino acids, phosphorus, nitrogen, zooplankton, aquaculture, biomolecules, water quality</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">254249</post-id>	</item>
		<item>
		<title>Tryptophan Glows Brightest as Electron Beams Reveal Hidden Light in Biomolecules</title>
		<link>https://scienmag.com/tryptophan-glows-brightest-as-electron-beams-reveal-hidden-light-in-biomolecules/</link>
		
		<dc:creator><![CDATA[Bethany Barker]]></dc:creator>
		<pubDate>Sun, 04 Oct 2026 10:22:35 +0000</pubDate>
				<category><![CDATA[Chemistry]]></category>
		<category><![CDATA[amino acids]]></category>
		<category><![CDATA[biological tissue imaging with electron beams]]></category>
		<category><![CDATA[biomolecular cathodoluminescence]]></category>
		<category><![CDATA[biomolecules]]></category>
		<category><![CDATA[carbohydrates]]></category>
		<category><![CDATA[cathodoluminescence]]></category>
		<category><![CDATA[difference between cathodoluminescence and optical fluorescence]]></category>
		<category><![CDATA[electron beam]]></category>
		<category><![CDATA[electron microscopy signals in biological tissues]]></category>
		<category><![CDATA[electron-beam excitation of organic molecules]]></category>
		<category><![CDATA[electron-beam interactions with amino acids]]></category>
		<category><![CDATA[FAD]]></category>
		<category><![CDATA[fluorescence]]></category>
		<category><![CDATA[high-energy electron effects on biomolecules]]></category>
		<category><![CDATA[light emission from organic molecules in electron microscopes]]></category>
		<category><![CDATA[NADH]]></category>
		<category><![CDATA[new insights into molecular radiation response]]></category>
		<category><![CDATA[organic molecule luminescence mechanisms]]></category>
		<category><![CDATA[radiation damage detection in biomaterials]]></category>
		<category><![CDATA[radiolysis]]></category>
		<category><![CDATA[scanning electron microscopy]]></category>
		<category><![CDATA[spectroscopy]]></category>
		<category><![CDATA[tryptophan]]></category>
		<category><![CDATA[tryptophan fluorescence under electron bombardment]]></category>
		<guid isPermaLink="false">https://scienmag.com/?p=234634</guid>

					<description><![CDATA[A systematic cathodoluminescence study reveals that aromatic amino acids, coenzymes, and carbohydrates emit light under electron-beam excitation in ways that defy the rules of ordinary fluorescence, with tryptophan glowing brightest and phenylalanine brightening under sustained irradiation.]]></description>
										<content:encoded><![CDATA[<p>When a beam of high-energy electrons strikes a crystal of tryptophan, the humble amino acid best known for its role in turkey dinners and serotonin production, it does something remarkable: it glows with an intensity that dwarfs nearly every other biological molecule tested. A new systematic study published in Results in Chemistry has mapped, for the first time, how a diverse panel of biologically essential organic molecules responds to electron-beam excitation, revealing that the rules governing this so-called cathodoluminescence are strikingly different from the familiar rules of optical fluorescence. The findings could reshape how scientists interpret signals from electron microscopes probing biological tissue, and may even point toward new ways of reading out radiation damage in soft molecular materials.</p>
<p>Cathodoluminescence, or CL, is a spectroscopic technique in which electrons rather than photons excite a material, prompting it to emit light. The method has long been a workhorse for characterizing inorganic semiconductors, phosphors, and wide-bandgap materials, where defect-related emission and excitation dynamics are well understood. Organic molecules, however, have remained largely terra incognita. Their structural complexity, strong nonradiative relaxation pathways, and susceptibility to irradiation-induced chemical modification have made them difficult subjects. Yet the payoff for studying them is considerable: high-energy electrons generate a broad cascade of secondary electrons that produce excitation and ionization events fundamentally different from those triggered by a laser or a lamp, potentially granting access to electronic states that optical methods simply cannot reach.</p>
<p>The research team, led by Wataru Inami and Yoshimasa Kawata with colleagues including Machi Takahashi, Kentaro Nakajima, Yu Masuda, and Kei Hosomi, chose their molecular targets with care. They compared three classes of biologically relevant compounds: the aromatic amino acids tryptophan, tyrosine, and phenylalanine in both their D- and L-forms; the coenzymes NADH and FAD, central players in cellular metabolism; and the carbohydrates glucose, glycogen, and sodium glucose-6-phosphate. All samples were measured as powders mounted on carbon tape inside a scanning electron microscope, with a parabolic collection mirror gathering the emitted light and feeding it through an optical fiber to a spectrometer equipped with a photomultiplier tube. Measurements were performed in vacuum at an acceleration voltage of 10 kilovolts and a beam current of 1 nanoampere, with the beam raster-scanned over the sample to record spatially integrated spectra.</p>
<p>The results were unambiguous in their hierarchy. Aromatic amino acids outshone coenzymes, which in turn outshone carbohydrates. When intensities were normalized to sodium glucose-6-phosphate, the weakest emitter, L-tryptophan registered a relative signal of roughly 305, while L-tyrosine and D-phenylalanine came in at around 10 to 11, NADH at about 3, FAD near 1, and glucose and glycogen at under 2. In absolute terms, L-tryptophan emitted approximately 30 times more light than L-tyrosine and 27 times more than D-phenylalanine. The likely culprit behind this dramatic difference is the indole ring, the fused double-ring structure unique to tryptophan&#8217;s side chain, whose conjugated system of delocalized pi-electrons provides an efficient channel for both electron excitation and radiative relaxation.</p>
<p>But here is where the story takes a turn that should make microscopists sit up: the dominant emission from tryptophan appeared not in the near-ultraviolet, where its famous intrinsic fluorescence lives, but as a broad, asymmetric band centered around 570 nanometers in the visible spectrum. The authors caution that this visible band cannot be straightforwardly assigned to the conventional low-lying excited states of the indole chromophore that govern ordinary photoluminescence. Instead, they suggest it may arise from solid-state or irradiation-modified emissive states, possibly involving molecular packing effects or multiple overlapping transitions. Notably, both D- and L-tryptophan showed comparable near-UV emission around 340 nanometers, yet the visible band was markedly stronger in the L-isomer, evidence that the visible component is not simply a scaled copy of the molecule&#8217;s familiar fluorescence.</p>
<p>Time-resolved measurements added another layer of intrigue. Under continuous electron irradiation, the 570-nanometer band of L-tryptophan steadily declined over 30 minutes, suggesting that the visible-emitting states are progressively deactivated or degraded rather than continuously generated. L-tyrosine, by contrast, held remarkably stable, its luminescence barely changing over 35 minutes of bombardment. Then came the surprise: L-phenylalanine did the opposite of fading. Its CL intensity increased with irradiation time, most dramatically between 10 and 20 minutes, while its dominant emission peak shifted from about 500 nanometers to 430 nanometers, a blue shift of roughly 0.40 electron-volts toward higher energy. Something about the electron beam appears to generate or activate additional higher-energy emissive states in phenylalanine, a molecule whose intrinsic fluorescence is normally confined to the near-ultraviolet and far too weak to explain these broad visible bands.</p>
<p>What could account for such divergent behavior among three amino acids that share the same backbone? The authors point to a competition between destructive and constructive processes. Electron irradiation can induce radiolysis and other chemical modifications that degrade existing emissive states, as apparently happens in tryptophan. But it can also create new radiative centers, as the phenylalanine results imply. Previous work has shown that self-assembled phenylalanine exhibits aggregation-induced visible emission, hinting that intermolecular organization and molecular packing, not just molecular composition, shape the CL response. The differing 430-to-500-nanometer intensity ratios between D- and L-phenylalanine reinforce this picture: the visible emission likely involves multiple electron-beam-induced emissive states whose populations depend on solid-state structure and irradiation history. The researchers are careful to note that their measurements alone cannot distinguish among molecular rearrangement, changes in packing, phase transformation, or specific radiolysis products, and that structural characterization before and after irradiation, for example by Raman spectroscopy, would be needed to settle the question.</p>
<p>The coenzymes and carbohydrates, though fainter, told a consistent story. NADH produced a broad band peaking near 510 nanometers but at only about one-sixtieth the intensity of L-tryptophan, while FAD yielded barely detectable signal across the visible range. Glucose and glycogen, despite glycogen&#8217;s being a complex branched polymer of glucose units, emitted nearly identical broad spectra centered around 460 nanometers, a neat confirmation that their shared glucose-based composition dictates their spectral character. Sodium glucose-6-phosphate, a central metabolic intermediate, glowed only weakly, with a low signal-to-noise ratio. Across all three classes, the degree of aromatic conjugation emerged as the decisive variable: the more extended and delocalized the pi-electron system, the brighter the electron-beam-induced glow.</p>
<p>The practical implications extend well beyond basic molecular spectroscopy. Electron-beam-induced autofluorescence has already been demonstrated in living cells, and cathodoluminescence has been observed in functional proteins such as enhanced green fluorescent protein and even in biogenic materials like human kidney stones. As label-free electron-beam microscopy techniques mature, understanding which biomolecules light up, at what wavelengths, and how their emission evolves under bombardment becomes essential for interpreting images correctly. A tryptophan-rich region of a protein will not simply mimic its optical fluorescence signature; it will glow green-yellow at 570 nanometers and fade with dose, while a phenylalanine-rich region may brighten and blue-shift as the beam lingers. Irradiation history, in other words, is written into the spectrum itself.</p>
<p>The study also demonstrates that CL measurements can serve as a sensitive readout of irradiation-induced changes in soft organic materials, a capability with potential relevance for radiation chemistry, electron-beam lithography of organic films, and even assessing radiation damage in biological specimens. The authors emphasize that systematic measurements as a function of accelerating voltage and quantified electron dose will be needed to disentangle direct excitation from irradiation-induced modification. For now, the message is clear and a little humbling: the molecules of life respond to electron beams in ways that neither textbooks on fluorescence nor intuition from optical spectroscopy would predict, and each molecule carries its own signature of damage, resilience, and transformation under the electron&#8217;s gaze.</p>
<p><strong>Subject of Research:</strong> Cathodoluminescence properties and electron-beam irradiation responses of biologically relevant organic molecules</p>
<p><strong>Article Title:</strong> Electron-beam-induced responses of biologically relevant organic molecules</p>
<p><strong>Article References:</strong> Inami, W., Takahashi, M., Nakajima, K., Masuda, Y., Hosomi, K., &amp; Kawata, Y. (2026). Electron-beam-induced responses of biologically relevant organic molecules. <em>Results in Chemistry, 31</em>, Article 103940. <a href="https://doi.org/10.1016/j.rechem.2026.103940" rel="noopener noreferrer">https://doi.org/10.1016/j.rechem.2026.103940</a></p>
<p><strong>Image Credits:</strong> AI Generated</p>
<p><strong>DOI:</strong> <a href="https://doi.org/10.1016/j.rechem.2026.103940" rel="noopener noreferrer">10.1016/j.rechem.2026.103940</a></p>
<p><strong>Keywords:</strong> cathodoluminescence, tryptophan, amino acids, electron beam, biomolecules, spectroscopy, radiolysis, NADH, FAD, carbohydrates, fluorescence, scanning electron microscopy</p>
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		<post-id xmlns="com-wordpress:feed-additions:1">234634</post-id>	</item>
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