New tool for analyzing mouse vocalizations may provide insights for autism modeling
Vocalization plays a significant role in social communication across species such as speech by humans and song by birds. Male mice produce ultrasonic vocalizations in the presence of females and both sexes sing during friendly social encounters. Mice have been genetically well characterized and used extensively for research on autism as well as in other areas, but until now there have been limitations to studying their ultrasonic vocalizations. A team of investigators, led by Pat Levitt, PhD, of The Saban Research Institute of Children's Hospital Los Angeles, have developed and demonstrated a novel signal-processing tool that enables unbiased, data-driven analysis of these sounds. The study was published in the journal Neuron on May 3.
Research into the underlying neurobiological basis and heritable nature of vocalizations in humans and animals has identified promising genes and neural networks involved in vocal production, auditory processing and social communication. "Understanding the complicated vocalizations of mice — and how they relate to their social behavior — will be crucial to advancing vocal and social communication research, including understanding how genes that affect vocal communication relate to children with developmental disorders including autism," said Levitt, who is also WM Keck Provost Professor in Neurogenetics at the Keck School of Medicine at USC.
The team of investigators developed and demonstrated a signal-processing tool that provides rapid, automated, unsupervised and time/date stamped analysis of the ultrasonic vocalizations of mice. Because of the time and date stamp attached to the vocalizations, the investigators expect that this tool will be useful in correlating vocalizations with video recorded behavioral interactions, allowing additional information to be mined from mouse models relevant to the social deficits experienced by persons with autism.
According to Allison Knoll, PhD, of CHLA, first co-author on the study, researchers in the field have been aware of and working to interpret the meaning of mouse vocalization by categorizing the sounds using a syllable classification system – with discrete sounds defined as syllables. Because there is such a wide variation in the types of ultrasonic vocalizations made by mice, in order to analyze the information researchers have had to develop ways of categorizing and combining sounds they perceived to be similar using manual or semi-automated techniques.
"This tool removes bias by fully automating the processing of vocalizations using signal-processing methods employed in human speech and language analysis," said Knoll. The signal-processing tool, called Mouse Ultrasonic Profile ExTraction (MUPET), is available through open-access software.
Additional contributors to the study include co-first author, Maarten Van Segbroeck and Shrikanth Narayanan both of the Viterbi School of Engineering at USC. Funding for the study was provided by National Science Foundation Grant IIS1029373, Autism Speaks postdoctoral fellowship 7596, Project 2 of the Conte Center Grant P50 MH096972 and the Simms/Mann Chair in Developmental Neurogenetics.
About Children's Hospital Los Angeles
Children's Hospital Los Angeles has been named the best children's hospital in California and among the top 10 in the nation for clinical excellence with its selection to the prestigious U.S. News & World Report Honor Roll. Children's Hospital is home to The Saban Research Institute, one of the largest and most productive pediatric research facilities in the United States. Children's Hospital is also one of America's premier teaching hospitals through its affiliation since 1932 with the Keck School of Medicine of the University of Southern California. For more information, visit CHLA.org. Follow us on Twitter, Facebook, YouTube and LinkedIn, or visit our blog at http://researchlablog.org/.
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