<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>Arthur Russell &#8211; Science</title>
	<atom:link href="https://scienmag.com/author/arthur-russell/feed/" rel="self" type="application/rss+xml" />
	<link>https://scienmag.com</link>
	<description></description>
	<lastBuildDate>Wed, 01 Jul 2026 00:41:25 +0000</lastBuildDate>
	<language>en-US</language>
	<sy:updatePeriod>
	hourly	</sy:updatePeriod>
	<sy:updateFrequency>
	1	</sy:updateFrequency>
	<generator>https://wordpress.org/?v=7.1</generator>

<image>
	<url>https://scienmag.com/wp-content/uploads/2024/07/cropped-scienmag_ico-32x32.jpg</url>
	<title>Arthur Russell &#8211; Science</title>
	<link>https://scienmag.com</link>
	<width>32</width>
	<height>32</height>
</image> 
<site xmlns="com-wordpress:feed-additions:1">73899611</site>	<item>
		<title>KAIST Creates AI That Interprets Animal Behavior as a Language</title>
		<link>https://scienmag.com/kaist-creates-ai-that-interprets-animal-behavior-as-a-language/</link>
		
		<dc:creator><![CDATA[Arthur Russell]]></dc:creator>
		<pubDate>Wed, 01 Jul 2026 00:41:25 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[AI animal behavior interpretation]]></category>
		<category><![CDATA[AI in neurological condition research]]></category>
		<category><![CDATA[animal behavior language translation]]></category>
		<category><![CDATA[BehaVERT transformer model]]></category>
		<category><![CDATA[behavioral sequence modeling]]></category>
		<category><![CDATA[BERT-based behavioral modeling]]></category>
		<category><![CDATA[contextual animal movement analysis]]></category>
		<category><![CDATA[deep learning for neuroscience]]></category>
		<category><![CDATA[machine learning for animal studies]]></category>
		<category><![CDATA[self-attention mechanisms in behavior]]></category>
		<category><![CDATA[semantic analysis of animal behavior]]></category>
		<category><![CDATA[skeletal keypoint analysis in animals]]></category>
		<guid isPermaLink="false">https://scienmag.com/kaist-creates-ai-that-interprets-animal-behavior-as-a-language/</guid>

					<description><![CDATA[In a groundbreaking advance at the intersection of artificial intelligence and neuroscience, researchers at KAIST have unveiled an AI model that deciphers animal behavior with a linguistic-like understanding. The model, named BehaVERT, represents a pioneering step toward translating complex behavioral movements into a structured, interpretable language. This technological breakthrough opens new pathways for studying neurological [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>In a groundbreaking advance at the intersection of artificial intelligence and neuroscience, researchers at KAIST have unveiled an AI model that deciphers animal behavior with a linguistic-like understanding. The model, named BehaVERT, represents a pioneering step toward translating complex behavioral movements into a structured, interpretable language. This technological breakthrough opens new pathways for studying neurological conditions and behavioral patterns with unprecedented granularity.</p>
<p>At the core of BehaVERT is a transformative idea: animal movements contain latent structures analogous to human language. Rather than viewing animal behavior as isolated actions, the researchers approached it as sequences imbued with contextual meaning. By transforming skeletal keypoints—such as the movements of a mouse&#8217;s nose, ears, spine, limbs, and tail—into discrete tokens, BehaVERT treats behavioral sequences like sentences formed from words, enabling deep semantic analysis.</p>
<p>BehaVERT employs a BERT-based transformer architecture, a state-of-the-art deep learning model originally developed for natural language processing tasks. Transformers excel at capturing relationships across sequences by self-attention mechanisms, which allow the model to weigh the importance of different tokens contextually. This architecture empowers BehaVERT to not only classify behaviors frame by frame but also to comprehend overarching behavioral states spanning across entire sequences, thereby mimicking the way language models infer meaning beyond individual words.</p>
<p>To train this model, the KAIST team annotated skeletal movements from video footage using a web-based tool, converting them into high-dimensional tokens—each frame yielding 768-dimensional representations. Leveraging a self-supervised learning framework, BehaVERT was able to learn patterns directly from behavioral data without requiring extensive manual labeling. This approach reduced bias and enabled the system to uncover intrinsic behavioral semantics inherent in the data.</p>
<p>The robustness of BehaVERT was validated across five international benchmark datasets, demonstrating its versatility in analyzing social interactions, multi-animal dynamics, complex three-dimensional motions, and autism-related behavioral profiles. Notably, the model’s performance surpassed existing behavioral classification methods, reflecting its capacity to understand nuanced motion patterns that are often imperceptible to human observers.</p>
<p>One of BehaVERT’s most compelling achievements is its ability to provide interpretability. The model’s attention mechanisms can be visualized along behavioral timelines, indicating which specific motions influenced decision-making. This interpretability is crucial for bridging the gap between AI predictions and biological understanding, allowing neuroscientists to validate or discover new behavioral markers.</p>
<p>A striking example of BehaVERT&#8217;s interpretive power came from its analysis of an autism mouse model (Shank3B knockout mice). The AI independently highlighted oral-oral contact behaviors as key differentiators between autistic and healthy mice. This is particularly significant because it aligns with established biological findings—autism model mice exhibit social interaction deficits despite normal approaches, a subtlety that the AI rediscovered solely from raw behavioral cues without prior biological knowledge.</p>
<p>Further analysis showed that BehaVERT’s internal representation space intrinsically structured behavioral attributes such as mobility, attention, and social engagement into coherent clusters. This discovery suggests that animal behavior may possess an underlying semantic architecture reminiscent of linguistic grammar and syntax, shedding new light on how complex behaviors are organized and understood.</p>
<p>Interdisciplinary collaboration was pivotal in the development of BehaVERT. Remarkably, the lead researchers, including first author Dr. Seungjae Shin, were primarily trained in biological sciences rather than AI, exemplifying a successful fusion of domain expertise. Their dedicated self-education in transformer architectures and deep learning underpinned the creation of customized models and training approaches tailored for decoding motion semantics in rodents.</p>
<p>BehaVERT represents not just a new tool for behavioral classification but a platform for scientific discovery. By enabling interpretable behavioral decoding, it heralds applications in drug discovery, psychiatric disorder research, and behavioral genetics. The capacity to interpret the “language” of motion allows researchers to formulate hypotheses grounded in data-driven insights, accelerating the pace of experimental biology.</p>
<p>An additional technological feat demonstrated by the team is the adaptability of BehaVERT across species. A model trained on rat behavior successfully generalized to mice, highlighting the potential to develop behavioral foundation models with cross-species applications. This adaptability could revolutionize comparative behavioral studies, providing scalable analytic frameworks for diverse animal models.</p>
<p>KAIST’s ongoing commitment to AI-driven behavioral science is evidenced by their prior work on AVATAR, which reconstructs rodent behavior in virtual environments to facilitate detailed study. BehaVERT builds on this legacy by adding semantic understanding to motion analysis, marking a significant milestone toward holistic behavioral neuroscience.</p>
<p>In summary, BehaVERT is a visionary AI system that reads animal behavior as if it were a language, uncovering hidden meanings and structures within seemingly erratic motions. Its integration of skeletal tokenization, transformer architectures, and self-supervised learning delivers a potent tool bridging computational science and biology. As behavioral data continue to expand in scale and complexity, BehaVERT promises to revolutionize how we decode the fundamental language of life.</p>
<hr />
<p><strong>Subject of Research</strong>: Not explicitly stated</p>
<p><strong>Article Title</strong>: BehaVERT: A Transformer-Based Motion Language Model for Decoding Behavioral Semantics in Mice</p>
<p><strong>News Publication Date</strong>: 24-Mar-2026</p>
<p><strong>Web References</strong>: <a href="http://dx.doi.org/10.1007/s11263-026-02834-y">http://dx.doi.org/10.1007/s11263-026-02834-y</a></p>
<p><strong>References</strong>:<br />
BehaVERT: A Transformer-Based Motion Language Model for Decoding Behavioral Semantics in Mice, International Journal of Computer Vision, DOI: 10.1007/s11263-026-02834-y</p>
<p><strong>Image Credits</strong>: KAIST</p>
<p><strong>Keywords</strong>: AI, animal behavior, transformer, BERT, motion language model, behavioral semantics, neuroscience, autism mouse model, deep learning, self-supervised learning, skeletal keypoints, behavioral analysis</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">169142</post-id>	</item>
		<item>
		<title>What Animal Behavior Reveals About Saving Nature: Insights from Creature Culture</title>
		<link>https://scienmag.com/what-animal-behavior-reveals-about-saving-nature-insights-from-creature-culture/</link>
		
		<dc:creator><![CDATA[Arthur Russell]]></dc:creator>
		<pubDate>Tue, 24 Jun 2025 19:55:25 +0000</pubDate>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[animal conservation strategies]]></category>
		<category><![CDATA[collective safety in animal groups]]></category>
		<category><![CDATA[cultural behaviors in animal communities]]></category>
		<category><![CDATA[elephant communication and dialects]]></category>
		<category><![CDATA[friendship dynamics among animal species]]></category>
		<category><![CDATA[genetic diversity in wildlife populations]]></category>
		<category><![CDATA[implications of animal social bonds]]></category>
		<category><![CDATA[insights from animal behavior research.]]></category>
		<category><![CDATA[preserving biodiversity through cultural understanding]]></category>
		<category><![CDATA[social learning in nonhuman animals]]></category>
		<category><![CDATA[the role of vocalizations in animal behavior]]></category>
		<category><![CDATA[translocation challenges in wildlife management]]></category>
		<guid isPermaLink="false">https://scienmag.com/what-animal-behavior-reveals-about-saving-nature-insights-from-creature-culture/</guid>

					<description><![CDATA[Animal conservation has long relied on the translocation of individuals between different herds or groups to bolster genetic diversity and improve overall population health. However, a surprising obstacle has recently emerged in these efforts: elephants, along with many other species, may not “speak” the same language. Recent studies have uncovered that populations of elephants inhabiting [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Animal conservation has long relied on the translocation of individuals between different herds or groups to bolster genetic diversity and improve overall population health. However, a surprising obstacle has recently emerged in these efforts: elephants, along with many other species, may not “speak” the same language. Recent studies have uncovered that populations of elephants inhabiting geographically close areas communicate through distinct variations of vocalizations known as “rumbles.” These subtle differences, often described as dialects, could significantly influence social integration, cooperation, and collective safety within animal communities.</p>
<p>The implications of such dialectical divergence extend far beyond mere communication challenges. If individual animals fail to understand or respond appropriately to the signals of others, their ability to form friendships, social bonds, or warn each other of predators or environmental hazards could be compromised. This revelation prompts a profound reevaluation of how social behaviors and traditions in nonhuman animals are maintained and transmitted across populations. More critically, it opens up the possibility that many wild animals possess culturally distinct behaviors that are not solely dictated by genetics or instinct but are acquired through social learning and tradition.</p>
<p>This insight into animal dialects forms part of a broader and increasingly compelling field of research that scrutinizes the cultural variability among wild species. Similar questions are being raised about chimpanzees, where some groups exhibit tool-using behaviors such as stone tool mastery while others do not. In parallel, studies of rats specializing in the consumption of pinecones suggest behavioral traditions that evolve according to local environmental conditions and social influences. These patterns underscore the importance of culture—defined broadly as socially learned behaviors that are passed between individuals—as a critical component of animal ecology and evolution.</p>
<p>Understanding how culture shapes animal behavior is also essential for conservation biology. As human-driven environmental changes accelerate, they threaten not just the survival of species but the persistence of unique behavioral traditions. This intersection of culture and conservation prompted researchers at the University of Arizona to develop an innovative and comprehensive initiative: The Animal Culture Database. Announced in a recent study published in the prestigious journal <em>Scientific Data</em>, this project collates decades of research on animal traditions into an openly accessible digital repository dedicated to cataloging vocal communications, mating displays, social play, and numerous other complex behaviors observed worldwide.</p>
<p>At its core, The Animal Culture Database employs a sophisticated, interactive global map that visualizes behavioral data linked to specific populations of animals. This spatially explicit tool enables scientists, educators, and conservationists to explore nuanced behaviors across species and regions—whether it’s dissecting the grooming rituals of gorillas, analyzing the breeding songs of avian species, or tracking the migratory patterns of whales. The database’s user-friendly interface offers multiple query options by species, behavior type, and geographic location, empowering exploratory research that bridges ethology, ecology, and conservation science.</p>
<p>The development of this ambitious database was spearheaded by Kiran Basava, a postdoctoral research associate at the University’s College of Information Science, in collaboration with a multidisciplinary team including faculty, postdoctoral scholars, and graduate students. Their collective effort involved an extensive meta-analysis of thousands of scientific publications, culminating in a rigorously curated selection of over a hundred studies that met stringent parameters for inclusion. Currently, the database encompasses detailed behavioral records from 30 mammalian species, 30 avian species, and one insect species, incorporating more than 120 studies in a structured, searchable format.</p>
<p>Such an initiative highlights the cross-disciplinary nature of contemporary animal behavior research. By integrating ecological data, social psychology, information science, and anthropology, the database not only synthesizes a fragmented body of literature but also facilitates novel insights into how culture evolves in the animal kingdom. One of the fundamental goals is to challenge the anthropocentric view that culture is a uniquely human trait, instead revealing a continuum of cultural complexity that extends across diverse taxa.</p>
<p>Moreover, ongoing efforts to expand the database promise to integrate findings from an additional six hundred studies. There are also plans to develop a participatory platform where external researchers can contribute new data, fostering a collaborative environment that evolves in tandem with advancements in the field. This open-source approach democratizes access to high-quality behavioral information, potentially accelerating the pace of discovery and application in areas ranging from wildlife management to behavioral ecology.</p>
<p>The resonance of this research touches on profound questions about the interconnectedness of humans and the natural world. By dissecting how animals learn from each other, adopt unique habits, and navigate social challenges, we gain a clearer understanding of the evolutionary roots of culture itself. Such knowledge informs ethical considerations about human impacts on ecosystems, emphasizing our obligation not only to preserve species but also to safeguard the intangible cultural heritage embedded in animal societies.</p>
<p>Furthermore, these insights carry practical implications for conservation strategies. As humans alter landscapes, introduce invasive species, or modify climate patterns, the traditional knowledge embedded in animal cultures may be disrupted or lost. Recognizing cultural diversity within species can refine translocation programs, helping conservationists ensure that moved animals can adapt and thrive socially in their new environments. It also strengthens arguments for protecting habitats that support not just biological but behavioral diversity.</p>
<p>The Animal Culture Database thus stands as a pioneering tool that merges data science with natural history. It catalyzes a new era of research where the behavioral richness of animals is mapped systematically and globally, offering a dynamic window into the complexity of life on Earth. As technology advances and datasets become richer, our capacity to decode the cultural tapestries woven through animal societies will deepen, inviting us to rethink long-held assumptions about intelligence, learning, and tradition beyond humanity.</p>
<p>In summation, this breakthrough initiative redefines how we perceive animal communication and culture, highlighting the diversity and adaptability of social behaviors across species. By recognizing and documenting the existence of nonhuman cultures, the scientific community not only challenges anthropocentrism but also enhances our ability to protect and understand the natural world in an era of rapid environmental change. The convergence of ethology, information science, and conservation biology represented by The Animal Culture Database marks a transformative step toward a more holistic appreciation and stewardship of animal life.</p>
<hr />
<p><strong>Subject of Research</strong>: Animals</p>
<p><strong>Article Title</strong>: Mapping nonhuman cultures with the Animal Culture Database</p>
<p><strong>News Publication Date</strong>: 17-Jun-2025</p>
<p><strong>Web References</strong>: <a href="http://dx.doi.org/10.1038/s41597-025-05315-y">10.1038/s41597-025-05315-y</a></p>
<p><strong>References</strong>: The study published in <em>Scientific Data</em></p>
<p><strong>Keywords</strong>: Animal communication, Animal migration, Behavioral ecology, Mating behavior, Animal psychology, Cultural anthropology, Bird migration, Migration tracking, Data sets, Information processing</p>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">55790</post-id>	</item>
		<item>
		<title>New AI tool developed for advanced animal behavior analysis</title>
		<link>https://scienmag.com/new-ai-tool-developed-for-advanced-animal-behavior-analysis/</link>
		
		<dc:creator><![CDATA[Arthur Russell]]></dc:creator>
		<pubDate>Tue, 28 May 2024 15:28:02 +0000</pubDate>
				<category><![CDATA[Social Science]]></category>
		<guid isPermaLink="false">https://scienmag.com/new-ai-tool-developed-for-advanced-animal-behavior-analysis/</guid>

					<description><![CDATA[Animal behavior analysis is a fundamental tool in various studies, ranging from basic neuroscience research to understanding the causes and treatments of diseases. It is widely applied not only in biological research but also across various industrial fields, including robotics. Recently, efforts have been made to accurately analyze animal behaviors using AI technology. However, there [&#8230;]]]></description>
										<content:encoded><![CDATA[<p style="text-align:justify">Animal behavior analysis is a fundamental tool in various studies, ranging from basic neuroscience research to understanding the causes and treatments of diseases. It is widely applied not only in biological research but also across various industrial fields, including robotics. Recently, efforts have been made to accurately analyze animal behaviors using AI technology. However, there are still limitations for AI to intuitively recognize different behaviors like human observers can.</p>
<p><img decoding="async" src="https://scienmag.com/wp-content/uploads/2024/05/New-AI-tool-developed-for-advanced-animal-behavior-analysis.jpeg" alt="Figure 1. Proposing a new behavior embedding evaluation metric: TPI (Temporal Proximity Index)"></p>
<p class="credit">Credit: Institute for Basic Science</p>
<p></p>
<div class="entry">
<p style="text-align:justify">Animal behavior analysis is a fundamental tool in various studies, ranging from basic neuroscience research to understanding the causes and treatments of diseases. It is widely applied not only in biological research but also across various industrial fields, including robotics. Recently, efforts have been made to accurately analyze animal behaviors using AI technology. However, there are still limitations for AI to intuitively recognize different behaviors like human observers can.</p>
<p style="text-align:justify">Traditional animal behavior research primarily involved filming animals with a single camera and analyzing low-dimensional data such as the time and frequency of specific movements. The analysis method provided AI with corresponding results for each piece of training data, akin to simply feeding AI with questions along with the answer key. While this method is straightforward, it requires time and labor-intensive human supervision to build the data. Observer bias is also a factor, as the analysis results can be distorted by the experimenter&#8217;s subjective judgment.</p>
<p style="text-align:justify">To overcome those limitations, a joint research team led by Director C. Justin LEE of the Center for Cognition and Sociality within the Institute for Basic Science, and CHA Meeyoung, the Chief Investigator (CI) of the Data Science Group at the IBS Center for Mathematical and Computational Sciences (also a professor in the School of Computing at KAIST), has developed a new analytical tool called &#8216;SUBTLE&#8217; (Spectrogram-UMAP-Based Temporal-Link Embedding). SUBTLE classifies and analyzes animal behavior through AI learning based on 3D movement information.</p>
<p style="text-align:justify">First, the research team recorded the movements of mice using multiple cameras, extracting the coordinates of nine key points such as the head, legs, and hips to obtain 3D action skeleton movement data over time. They then reduced this time-series data into two dimensions for embedding, a process that creates a collection of vectors corresponding to each piece of data, allowing complex data to be represented more concisely and meaningfully.</p>
<p style="text-align:justify">Next, the researchers clustered similar behavior states into subclusters and grouped these subclusters into superclusters representing standardized behavior patterns (repertoires), such as walking, standing, grooming, etc. During this process, they proposed a new metric called the Temporal Proximity Index (TPI) to evaluate behavior data clusters. This metric measures whether each cluster includes the same behavior state and effectively represents temporal movements, similar to how humans consider temporal information important when classifying behavior.</p>
<p style="text-align:justify">CI CHA Meeyoung stated, &#8220;The introduction of new evaluation metrics and benchmark data to aid in the automation of animal behavior classification is a result of the collaboration between neuroscience and data science. We expect this algorithm to be beneficial in various industries requiring behavior pattern recognition, including the robotics industry, which aims to mimic animal movements.&#8221;</p>
<p style="text-align:justify">Director C. Justin LEE of the Center for Cognition and Sociality, who led this research commented, &#8220;We have developed an effective behavior analysis framework that minimizes human intervention while understanding complex animal behaviors by applying human behavior pattern recognition mechanisms. This framework has significant industrial applications and can also be used as a tool to gain deeper insights into the principles of behavior recognition in the brain.&#8221;</p>
<p style="text-align:justify">Additionally, the research team transferred SUBTLE technology to Actnova, a company specializing in AI-based clinical and non-clinical behavior test analysis, in April last year. The team utilized Actnova&#8217;s animal behavior analysis system, AVATAR3D, to obtain 3D movement data of animals for this research.</p>
<p style="text-align:justify">The research team has also made SUBTLE&#8217;s code open-source, and a user-friendly graphical interface (GUI) to facilitate animal behavior analysis is available through the SUBTLE web service ( for researchers who are not familiar with programming.</p>
<p>This research was published online on May 20th in the prestigious AI computer vision journal, the<em> International Journal of Computer Vision (IJCV).</em></p>
<hr class="hidden-xs hidden-sm">
<hr class="major visible-sm">
<div class="featured_image">
<div class="details">
<div class="well">
<h4>Journal</h4>
<p>International Journal of Computer Vision</p>
</p></div>
<div class="well">
<h4>DOI</h4>
<p><a href="http://dx.doi.org/10.1007/s11263-024-02072-0" target="_blank" rel="noopener">10.1007/s11263-024-02072-0 <i class="fa fa-sign-out"></i></a></p>
</p></div>
<div class="well">
<h4>Method of Research</h4>
<p>Experimental study</p>
</p></div>
<div class="well">
<h4>Subject of Research</h4>
<p>Animals</p>
</p></div>
<div class="well">
<h4>Article Title</h4>
<p>SUBTLE: An Unsupervised Platform with Temporal Link Embedding that Maps Animal Behavior</p>
</p></div>
<div class="well">
<h4>Article Publication Date</h4>
<p>20-May-2024</p>
</p></div></div></div></div>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">9093</post-id>	</item>
		<item>
		<title>Artificial intelligence resolves conflicts impeding animal behavior research</title>
		<link>https://scienmag.com/artificial-intelligence-resolves-conflicts-impeding-animal-behavior-research/</link>
		
		<dc:creator><![CDATA[Arthur Russell]]></dc:creator>
		<pubDate>Thu, 23 May 2024 21:47:06 +0000</pubDate>
				<category><![CDATA[Social Science]]></category>
		<guid isPermaLink="false">https://scienmag.com/artificial-intelligence-resolves-conflicts-impeding-animal-behavior-research/</guid>

					<description><![CDATA[Artificial intelligence software has been developed to rapidly analyze animal behavior so that behaviors can be more precisely linked to the activity of individual brain circuits and neurons, researchers in Seattle report. Credit: Michael McCarthy/UW Medicine Artificial intelligence software has been developed to rapidly analyze animal behavior so that behaviors can be more precisely linked [&#8230;]]]></description>
										<content:encoded><![CDATA[<p>Artificial intelligence software has been developed to rapidly analyze animal behavior so that behaviors can be more precisely linked to the activity of individual brain circuits and neurons, researchers in Seattle report.</p>
<p><img decoding="async" src="https://scienmag.com/wp-content/uploads/2024/05/Artificial-intelligence-resolves-conflicts-impeding-animal-behavior-research.jpeg" alt="Neurobehavior lab"></p>
<p class="credit">Credit: Michael McCarthy/UW Medicine</p>
<p></p>
<div class="entry">
<p>Artificial intelligence software has been developed to rapidly analyze animal behavior so that behaviors can be more precisely linked to the activity of individual brain circuits and neurons, researchers in Seattle report.</p>
<p>The program promises not only to speed research into the neurobiology of behavior, but also to enable comparison and reconcile results that disagree due to differences in how individual laboratories observe, analyze and classify behaviors, said <a href="https://goldenneurolab.com/" target="_blank" rel="noopener">Sam Golden</a>, assistant professor of biological structure at the University of Washington School of Medicine. </p>
<p>“The approach allows labs to develop behavioral procedures however they want and makes it possible to draw general comparisons between the results of studies that use different behavioral approaches,” he said.</p>
<p>A paper describing the program appears in the journal <em><a href="https://www.nature.com/articles/s41593-024-01649-9" target="_blank" rel="noopener">Nature Neuroscience</a></em>. Golden and Simon Nilsson, a postdoctoral fellow in the Golden lab, are the paper’s senior authors. The first author is Nastacia Goodwin, a graduate student in the lab.</p>
<p>The study of the neural activity behind animal behavior has led to major advances in the understanding and treatment of such human disorders as addiction, anxiety and depression. </p>
<p>Much of this work is based on observations painstakingly recorded by individual researchers who watch animals in the lab and note their physical responses to different situations, then correlate that behavior with changes in brain activity. </p>
<p>For example, to study the neurobiology of aggression, researchers might place two mice in an enclosed space and record signs of aggression. These would typically include observations of the animals’ physical proximity to one another, their posture, and physical displays such as rapid twitching, or rattling, of the tail. </p>
<p>Annotating and classifying such behaviors is an exacting, protracted task. It can be difficult to accurately recognize and chronicle important details, Golden said. “Social behavior is very complicated, happens very fast and often is nuanced, so a lot of its components can be lost when an individual is observing it.” </p>
<p>To automate this process, researchers have developed AI-based systems to track components of an animal’s behavior and automatically classify the behavior, for example, as aggressive or submissive. </p>
<p>Because these programs can also record details more rapidly than a human, it is much more likely that an action can be closely correlated with neural activity, which typically occurs in milliseconds.</p>
<p>One such program, developed by Nilsson and Goodwin, is called SimBA, for Simple Behavioral Analysis. The open-source program features an easy-to-use graphical interface and requires no special computer skills to use. It has been widely adopted by behavioral scientists. </p>
<p>“Although we built SimBA for a rodent lab, we immediately started getting emails from all kinds of labs: wasp labs, moth labs, zebrafish labs,” Goodwin said.</p>
<p>But as more labs used these programs, the researchers found that similar experiments were yielding vastly different results.</p>
<p> “It became apparent that how any one lab or any one person defines behavior is pretty subjective, even when attempting to replicate well-known procedures,” Golden said.</p>
<p>Moreover, accounting for these differences was difficult because it is often unclear how AI systems arrive at their results, their calculations occurring in what is often characterized as “a black box.”</p>
<p>Hoping to explain these differences, Goodwin and Nilsson incorporated into SimBA a machine-learning explainability approach that produces what is called the Shapely Additive exPlanations (SHAP) score. </p>
<p>Essentially what this explainability approach does is determine how removing one feature used to classify a behavior, say tail rattling, changes the probability of an accurate prediction by the computer. </p>
<p>By removing different features from thousands of different combinations, SHAP can determine how much predictive strength is provided by any individual feature used in the algorithm that is classifying the behavior. The combination of these SHAP values then quantitatively defines the behavior, removing the subjectivity in behavioral descriptions.</p>
<p>“Now we can compare (different labs’) respective behavioral protocols using SimBA and see whether we’re looking, objectively, at the same or different behavior,” Golden said.</p>
<p>“This approach allows labs to design experiments however they like, but because you can now directly compare behavioral results from labs that are using different behavioral definitions, you can draw clearer conclusions between their results. Previously, inconsistent neural data could have been attributed to many confounds, and now we can cleanly rule out behavioral differences as we strive for cross-lab reproducibility and interpretability” Golden said.</p>
<p>This research was supported by grants from the National Institutes of Health (K08MH123791), the National Institute on Drug Abuse (R00DA045662, R01DA059374, P30DA048736), National Institute of Mental Health (1F31MH125587, F31AA025827, F32MH125634), National Institute of General Medicine Sciences (R35GM146751), Brain &#038; Behavior Research Foundation, Burroughs Wellcome Fund, Simons Foundation, and Washington Research Foundation.</p>
<p> </p>
<hr class="hidden-xs hidden-sm">
<hr class="major visible-sm">
<div class="featured_image">
<div class="details">
<div class="well">
<h4>Journal</h4>
<p>Nature Neuroscience</p>
</p></div>
<div class="well">
<h4>DOI</h4>
<p><a href="http://dx.doi.org/10.1038/s41593-024-01649-9" target="_blank" rel="noopener">10.1038/s41593-024-01649-9 <i class="fa fa-sign-out"></i></a></p>
</p></div>
<div class="well">
<h4>Method of Research</h4>
<p>Experimental study</p>
</p></div>
<div class="well">
<h4>Subject of Research</h4>
<p>Animals</p>
</p></div>
<div class="well">
<h4>Article Title</h4>
<p>Simple Behavioral Analysis (SimBA) as a platform for explainable machine learning in behavioral neuroscience</p>
</p></div>
<div class="well">
<h4>COI Statement</h4>
<p>The authors declare no competing interests.</p>
</p></div></div></div></div>
]]></content:encoded>
					
		
		
		<post-id xmlns="com-wordpress:feed-additions:1">8869</post-id>	</item>
	</channel>
</rss>
